Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0201 ATGGCACAAAATTTATCAGAGGAGCTTGTGGGTTCAGAGATACATGGCTTCCACAAATTGGATGAGCTGGATGTTGGGAACACTATGGAAGAAGCAAAAAGCAGATGGCTACGCCCCAATGAGATTCATGCCATACTCAGTAATTACAAGTACTTCACGATCCGTGTCAAGCCAATGCATCTGCCCAAAAGTGGTACTGTTGTATTATTTGACCGCAAGGTGCTTAGGAACTTTCGAAAAGATGGGCACAATTGGAAAAAGAAAAATGATGGAAAAACTGTTAAAGAGGCTCATGAGCACTTAAAAGTCGGTACTGAAGAAAGGATCCATGTATATTATGCCCGTGGACAAGATAACCCGAGCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCATGTAGTCCTTGTTCATTATCGTGAAACGCAGGAGTTGCAAGGTTCTCCTGTCACACCTGTATATTCAAATTCAAGTTCTTCCTCTGATCCAACTGCACCTTTGATTTTACCGGAAGGCTTAGATTCTGGGACCAACGTTGCTTATGCTGATGGGCTTAATGACAATTTAACAGTCAAAAGTCATGAAATAAGACTTCATGAGCTTAACACACTTGAATGGGATGACTTAGTGGCTTCAAATTATAACACCTCTACTAAACCTGCTGAAGGCAATGTTCCATGTTTGCATCAACAAAATCAAAGTTTACTCAATGGAAGCTTTGGCCATGTAGCAAGCAATCCTTCTGCAGAAGTTCCTTCTTTTGATAATTCGACTCAGCCAATTTCTGGGAGCGATTGTGTTCCGCACAGTTCTCTAGAAATTGCTAATGTTCAAAAGGATTGTCCTATCTCATTGGGTGGTGTTGTTTCCTTAGACACTTCGGTCAATGGAGGATTGCAAAGTCAGGACAGCTTCGGAAAGTGGATAAACGAAATCATATTGGATTCACCATGTTCTGCAGATGAGTCTGCTCTCAAATCCTCCATTTCTTCATCTGTTCATAAACCAAATTCGTCACTTGTGGATAGTCAGAAATCTTCTCTGCCAGAGCAAGTGTTTAATATCACTGAGGTGTCCCCTGCATGGGCATCTTCCACTGAGAAGACAAAGGTCTTAATAACTGGATTATTTCATAATGATTATCAATCACTTGAAAAGTCCAATCTACTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGTTGGGTATCACCACATTCTCCTGGATTTGTGAGTCTCTATATGAGCTTGGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCATGATCCTGCCGCTTATATGGAAGAGAAACACAACCGTGAAGAGTTTCGACTCCAGATGAGACTTGCTCATTTGCTCTTTACTACACAAAGGAGCCTTGATATTTTCTCTAGTAAAGTATCACCTAATGCACTGGAATATGCTAGGAAATTTGTCTCCAAAACATCATTCATGGCCAACAGTTGGCAATACTTGATGAAATCAACTGACGACAATACAATTCCATTTTCACAAGCAAAAAATGACTTGTTTGAAATTTCATTGAGAAACAGACTAAAGGAATGGCTTTTGGAACGTATTGTCTTAGGCTGTAATACTGCCGAATATGATGCACAAGGCCAAGGTGTAATCCATTTATGTGCAATTCTGGGTTATACTTGGGCTGTGTCCTTATTTTCATGGTCAGGCCTGACGCTGGATTTTCGCGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAGAAGATGGTTGCAACTTTGTTGTCGTCTGGGGCTAAGCCAAACTTGGTCACGGATCCAACTCCACAAAATCCGGGTGGATGTACTGCTGCTGATCTTGCTTATGTGAAGGGATATGATGGCTTAGCAGCATATCTTTCAGAAAAATCTTTGGTTGAACAATTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCGCTGGAAACTAGCACAACTGATCCAGTAAAATCTGAGAACCTTACTGAGGACCAGCTATACATGAAGGAAACATTGGCAGCTTACCGAATAACTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCGCTAAAATTGCGATCACAGGCAATTGAATTTCTCAGTCCAGAGGATGAAGCACGCCATATAGTAGCAGCAATGAAGATTCAGCATGCTTTTCGCAACTTTGAGAGTAGGAAAATGATGGCTGCTGCTGCTCGGATCCAACACAGATTCCGTGCGTGGAAGCTCCGTAGAGAATTTCTCCATATGAGACGTCAGGCTATTATAATTCAAGCTGCTTTCAGGGGATTTCAAGTGCGGAGGCAATATCGTAAAATTATTTGGTCTGTCGGAGTGCTCGAGAAAGCAATCCTGCGTTGGCGTCTAAAGAGAAAAGGCTTCCGCGGCCTCCAGGTTAACCCTGTTCAAGAAATTAAAGATGACAAGCAGGAAAGTGATGTAGAGGAGGACTTCTTCCGAATTGGTAGGAAACAAGCTGAAGAACGCGTAGAGAGATCTGTAGTTCGTGTACAGGCCATGTTCCGGTCCAAGAAAGCACAAGAAGAATATAGGAGGATGAAGCTGGCTCATAGTCAAGCAAAGCTGGAGCTTGAATTTGAAGATTTCCTCAATTCTGAAGTTGACATGTTAACAAAGATATAA 2733 0.4201 MAQNLSEELVGSEIHGFHKLDELDVGNTMEEAKSRWLRPNEIHAILSNYKYFTIRVKPMHLPKSGTVVLFDRKVLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGTEERIHVYYARGQDNPSFVRRCYWLLDKSLEHVVLVHYRETQELQGSPVTPVYSNSSSSSDPTAPLILPEGLDSGTNVAYADGLNDNLTVKSHEIRLHELNTLEWDDLVASNYNTSTKPAEGNVPCLHQQNQSLLNGSFGHVASNPSAEVPSFDNSTQPISGSDCVPHSSLEIANVQKDCPISLGGVVSLDTSVNGGLQSQDSFGKWINEIILDSPCSADESALKSSISSSVHKPNSSLVDSQKSSLPEQVFNITEVSPAWASSTEKTKVLITGLFHNDYQSLEKSNLLCVCGDVSVPVEIVQVGVYRCWVSPHSPGFVSLYMSLDGHKPISQVVNFEYRTPVLHDPAAYMEEKHNREEFRLQMRLAHLLFTTQRSLDIFSSKVSPNALEYARKFVSKTSFMANSWQYLMKSTDDNTIPFSQAKNDLFEISLRNRLKEWLLERIVLGCNTAEYDAQGQGVIHLCAILGYTWAVSLFSWSGLTLDFRDKFGWTALHWAAYYGREKMVATLLSSGAKPNLVTDPTPQNPGGCTAADLAYVKGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTTDPVKSENLTEDQLYMKETLAAYRITAEAAARIQAAFREHSLKLRSQAIEFLSPEDEARHIVAAMKIQHAFRNFESRKMMAAAARIQHRFRAWKLRREFLHMRRQAIIIQAAFRGFQVRRQYRKIIWSVGVLEKAILRWRLKRKGFRGLQVNPVQEIKDDKQESDVEEDFFRIGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHSQAKLELEFEDFLNSEVDMLTKI* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0201 910 ProSiteProfiles Ankyrin repeat region circular profile. 593 621 - -
Lan16g0201 910 MobiDBLite consensus disorder prediction 151 174 - -
Lan16g0201 910 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Lan16g0201 910 SMART iq_5 779 801 IPR000048 GO:0005515
Lan16g0201 910 SMART iq_5 859 881 IPR000048 GO:0005515
Lan16g0201 910 SMART iq_5 756 778 IPR000048 GO:0005515
Lan16g0201 910 Gene3D Immunoglobulins 352 447 IPR013783 -
Lan16g0201 910 ProSiteProfiles IQ motif profile. 757 783 IPR000048 GO:0005515
Lan16g0201 910 Pfam Ankyrin repeats (3 copies) 544 622 IPR002110 GO:0005515
Lan16g0201 910 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Lan16g0201 910 Pfam IQ calmodulin-binding motif 782 801 IPR000048 GO:0005515
Lan16g0201 910 ProSiteProfiles IQ motif profile. 780 804 IPR000048 GO:0005515
Lan16g0201 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 807 IPR027417 -
Lan16g0201 910 Gene3D - 525 662 IPR036770 -
Lan16g0201 910 Gene3D - 756 804 - -
Lan16g0201 910 SMART CG_1_2 29 146 IPR005559 GO:0003677
Lan16g0201 910 ProSiteProfiles IQ motif profile. 861 889 IPR000048 GO:0005515
Lan16g0201 910 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 908 - -
Lan16g0201 910 SUPERFAMILY E set domains 357 444 IPR014756 -
Lan16g0201 910 MobiDBLite consensus disorder prediction 151 168 - -
Lan16g0201 910 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 908 - -
Lan16g0201 910 SUPERFAMILY Ankyrin repeat 541 655 IPR036770 -
Lan16g0201 910 Coils Coil 873 893 - -
Lan16g0201 910 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Lan16g0201 910 SMART ANK_2a 632 663 IPR002110 GO:0005515
Lan16g0201 910 SMART ANK_2a 593 622 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0201 Lan-Chr16 1573965 1582439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0201 29 893 CAMTA Transcription Factor Family AT3G16940 55.184 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lan16g0201 CG-1 3.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0201 K21596 - gmx:100819198 1389.4