Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0193 ATGTCGTTGAGGCCTAATGCCAGGACCGAGGGACGCCGCAACCGCTACAAGGTGGCCGTTGATGCCGACGAGGGTCGCCGACGGAGGGAGGATAACATGGTTGAGATCCGAAAGAATAAGCGTGAAGAGAGCCTCCAGAAGAAGCGTCGTGAAGGTCTCCAAGCTCAGCTTCAGTTCCAAACTCCTATTCAAGCTTCCACCACTGTTGAGAAAAAGTTAGAGAGTCTTCCTGCGTTGGTTGCTGGGGTCTGGTCTGAAGATAACAACCAGCAACTGGAAGCAACTACGCAATTTCGGAAGCTTCTTTCCATTGAGCGCTGCCCTCCGATTGAGGAAGTTATTCAATCTGGTGTTGTCCCGCGTTTTGTTCAGTTTCTTGTTAGGGAGGATTTCCCACAACTTCAGTTTGAGGCTGCTTGGGCTCTCACAAACATAGCATCTGGAACTTCTGATAACACTAAGGTGGTGATTGATCACGGAGCAGTCCCAATATTTGTCAAGCTACTTAGTTCACCCAGTGATGATGTTCGGGAGCAGGCGGTGTGGGCATTGGGAAATGTTGCTGGTGACTCTCCTAGGTGTCGTGATCTTGTTCTCGGTCATGGTGCCCTTATCCCATTATTAGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTAAGAAATGCCACATGGACTCTGTCAAACTTTTGCAGGGGCAAGCCACAACCTCCATTTGAACAGGTGAGGCCAGCACTTCCAGCTCTTGAGCGTTTGGTTCATTCCAATGATGAAGAAGTTCTAACAGATGCATGCTGGGCACTGTCATATCTTTCTGATGGAACAAATGACAAAATACAAGCAGTTATTGAGGCAGGTGTATGTACTCGCCTGGTGGAGCTCCTTCTGCATCCGTCTCCGACAGTGCTGATTCCTGCTCTTCGCACAGTGGGTAATATTGTCACTGGTGACGATATGCAGACTCAGGCTATTATCAATCATGGTGCACTCCCATGTCTTTTGAACCTGTTAACACATAATCATAAAAAAAGTATCAAGAAAGAAGGTTGCTGGACTATATCAAACATTACAGCTGGAAACAAAGAACAAATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCTCTTGTCAATCTTCTTCTAAATGCTGAGTTCGACATTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACTTCTGGTGGTACTCATGAGCAGATAAAGTATTTGGTGAGCCAAGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCTGACCCAAGAATTGTCACCGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTCGGGGAATCTGAGAAGAGCTTAGGTAATACTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGATTGGAGAAAATTGAAAACCTGCAGAGTCATGACAACAATGAAATATATGAGAAGGCTGTTAAAATTCTTGAAACATATTGGTTGGAAGATGAAGATGAGACACTACCTCCAGGAGATAATGCTCAAGGTGGTTTCAATTTTGGAAGTAGCGACCTTCCGGTTCCATCTGGTGGATTCAACTTCAGTTGA 1596 0.4549 MSLRPNARTEGRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQAQLQFQTPIQASTTVEKKLESLPALVAGVWSEDNNQQLEATTQFRKLLSIERCPPIEEVIQSGVVPRFVQFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCTRLVELLLHPSPTVLIPALRTVGNIVTGDDMQTQAIINHGALPCLLNLLTHNHKKSIKKEGCWTISNITAGNKEQIQAVIEAGLIAPLVNLLLNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGESEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGDNAQGGFNFGSSDLPVPSGGFNFS* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0193 531 MobiDBLite consensus disorder prediction 8 24 - -
Lan16g0193 531 PANTHER IMPORTIN ALPHA 2 522 - -
Lan16g0193 531 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Lan16g0193 531 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lan16g0193 531 Gene3D - 74 497 IPR011989 -
Lan16g0193 531 Pfam Atypical Arm repeat 458 504 IPR032413 -
Lan16g0193 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Lan16g0193 531 PIRSF Importin_alpha 2 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lan16g0193 531 MobiDBLite consensus disorder prediction 1 24 - -
Lan16g0193 531 Gene3D - 11 50 IPR036975 GO:0006606
Lan16g0193 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Lan16g0193 531 SUPERFAMILY ARM repeat 5 502 IPR016024 -
Lan16g0193 531 Pfam Importin beta binding domain 12 96 IPR002652 GO:0006606|GO:0061608
Lan16g0193 531 MobiDBLite consensus disorder prediction 503 531 - -
Lan16g0193 531 MobiDBLite consensus disorder prediction 512 531 - -
Lan16g0193 531 SMART arm_5 317 358 IPR000225 GO:0005515
Lan16g0193 531 SMART arm_5 234 273 IPR000225 GO:0005515
Lan16g0193 531 SMART arm_5 275 315 IPR000225 GO:0005515
Lan16g0193 531 SMART arm_5 106 147 IPR000225 GO:0005515
Lan16g0193 531 SMART arm_5 403 443 IPR000225 GO:0005515
Lan16g0193 531 SMART arm_5 360 400 IPR000225 GO:0005515
Lan16g0193 531 SMART arm_5 190 232 IPR000225 GO:0005515
Lan16g0193 531 SMART arm_5 149 189 IPR000225 GO:0005515
Lan16g0193 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Lan16g0193 531 Pfam Armadillo/beta-catenin-like repeat 108 147 IPR000225 GO:0005515
Lan16g0193 531 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Lan16g0193 531 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Lan16g0193 531 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Lan16g0193 531 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Lan16g0193 531 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Lan16g0193 531 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Lan16g0193 531 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Lan16g0193 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0193 Lan-Chr16 1516623 1521012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0193 132 392 U-box Gene Family AT3G46510 25.191 1.41e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0193 K15042 - gmx:100808498 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0636 4 8705247 8709281 Lan16g0193 16 1516623 1521012 LSH
Lan16g0193 16 1516623 1521012 Lan19g0867 19 16146329 16150307 LSH
Lan12g0883 12 15876981 15881492 Lan16g0193 16 1516623 1521012 PCT
Lan16g0193 16 1516623 1521012 Lan12g0883 12 15876981 15881492 PCT