Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0191 ATGAATCTGAGCATGTCAACGCCTAGTTCAAGTTCACCTCTCAAATCTTCCGACGCCATCTCCGACCAGTTTCCGGCGGGTCTCCGGGTACTTGTGGTGGATGATGACCCAACTTGTCTTATGATCCTTGATAGGATGCTACGTGCTTGCTTCTATGAAGTGACCAAATGCAAGAGAGCAGAGGTTGCATTGTCTATTCTGAGAGAGAACAAAAATGGGTTCGATATCGTTCTAAGTGACGTGCATATGCCCGATATGGATGGATTTAAACTTCTAGAGCATATTGGATTGGAGATGGACCTTCCGGTTATTATGATGTCAGCAGATGATGGTAAACAAGTTGTAATGAAGGGTGTGACTCATGGTGCTTGCGATTATCTAATTAAACCCGTGCGTATAGAGGCTTTAAAGAATATATGGCAGCATGTGGTTCGGAGAAGAAAGAACGGGTCTAAAGATCTGGAGCAATCGGGTAGTGTAGATGAGGGAGATCGACAGCTAAAGGCATTTGATGATCCGGATTACTCGTCGTCTGCAAATGAAGGGAAATCCTCAAAGAAGAGGAGGGATGAGGAAGAAGATCCAGACGAGAGGGACGATTCTTCCACGTTAAAGAAGCCGCGAGTCGTTTGGTCTGTTGAACTTCATCAACAGTTCATGGCGGCTGTCAATCAGCTCGGACTAGACAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGGCTAACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTACCTTAGAAGGCTGAGTGGAGTATCACCGCAGCAGAGTAACTTGAATAACCCCTTCATCAACCCCCAAGAGGCGTCATTTGGGGCAACGTCAATCAACGGAATTGATCTTCTAACTCTTCAAGCTGCTGGCCACCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCCGCAGGGCTTGGCAGGCTAACTGCAAAAGCCGGTGTATCTATGTCTCTAGTTGAACAAAGGAACCTTTTCAGTTTCGAAAACCCGAGAATAAGATTTGGAGAAAGCCAACTGCAACATTTGAGCAATAGTAAACCAATGAACTTACTTCATGGAATCCCTACCAACATGGAGCCAAAACAGCTTGCCAATTTGCACCAACCTACCCAATCCCTTGGCAACTTGAACATGCGAGTCAATTCTTCTACCGCACAGACCAACCCCTTGTTGATGCATATGGCTCAATCCCAACCAAGAGGTCACATGCTAAGTGAAAATACTGGTTCTCATGTTAATAGGCTTCAATCATCCTTGGTGCAGACTACATTACCAAATGGAATTTCTAATGATATTTTGGGAAATGGGATTGCGGGTACCAGCAATATAAATACTGCTTATAATCCACTTCAACAAAACTCTTCAATTTCGAGTTTTCCCATGAACCAATCCACTGAAATGGCTGTCACTAGTTTCCCTCTTGGAAGCACTCCTCCAATATCCAGTATGGCAACAAAAGGCATGTTTCATGAAGAAGTTTCTTCGGGATTTAAGGGATCTAGTGGATTTGTTCCAAGTTATGACATCTTTAACGAACTCAATCATCACAAGTCCCATGATTGGGACTTAGCAAATGCAGGTCTAACATTTGATATCTCTCAGCACAGGAATACTTCAATAAGTAACATTGATGTATCACCATCCGTTTTAGTCCATCAGAGTTTTCCACCTATCCATCAGACTGGACAAAATAGAGACGCTACTTCAATTGGAAAAGGTATGTTCTCAATAGGTGAAGGAATGAGTCAAGGTAATCTCCAAAACTTCGGTCAACACCACAGTACGCATCTTGTTGACAATTCAGTAAAGGTTAAGGCTGAACGAGTTCATGACCCAAGCTCTCAGATTAATCTCTTTTCAGAACAATATGGGCAGGAGGATCTTATGAGCGCACTTCTGAAACAGCAAGGAGGCATTGGACTAGCTGAAAATGAGTTTGACTTTGATGGATATTCCTTAGACAACATTCCGGTCTAG 2016 0.4345 MNLSMSTPSSSSPLKSSDAISDQFPAGLRVLVVDDDPTCLMILDRMLRACFYEVTKCKRAEVALSILRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRRKNGSKDLEQSGSVDEGDRQLKAFDDPDYSSSANEGKSSKKRRDEEEDPDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGLDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPQQSNLNNPFINPQEASFGATSINGIDLLTLQAAGHLPAQSLAKLQAAGLGRLTAKAGVSMSLVEQRNLFSFENPRIRFGESQLQHLSNSKPMNLLHGIPTNMEPKQLANLHQPTQSLGNLNMRVNSSTAQTNPLLMHMAQSQPRGHMLSENTGSHVNRLQSSLVQTTLPNGISNDILGNGIAGTSNINTAYNPLQQNSSISSFPMNQSTEMAVTSFPLGSTPPISSMATKGMFHEEVSSGFKGSSGFVPSYDIFNELNHHKSHDWDLANAGLTFDISQHRNTSISNIDVSPSVLVHQSFPPIHQTGQNRDATSIGKGMFSIGEGMSQGNLQNFGQHHSTHLVDNSVKVKAERVHDPSSQINLFSEQYGQEDLMSALLKQQGGIGLAENEFDFDGYSLDNIPV* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0191 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 641 - -
Lan16g0191 671 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Lan16g0191 671 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Lan16g0191 671 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Lan16g0191 671 PIRSF RR_ARR_type-B 7 662 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan16g0191 671 SUPERFAMILY CheY-like 27 149 IPR011006 -
Lan16g0191 671 MobiDBLite consensus disorder prediction 150 205 - -
Lan16g0191 671 Pfam Response regulator receiver domain 30 138 IPR001789 GO:0000160
Lan16g0191 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 641 IPR045279 GO:0009736
Lan16g0191 671 Gene3D - 203 265 - -
Lan16g0191 671 MobiDBLite consensus disorder prediction 150 171 - -
Lan16g0191 671 SMART REC_2 28 140 IPR001789 GO:0000160
Lan16g0191 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 262 IPR017930 -
Lan16g0191 671 CDD REC_typeB_ARR-like 30 144 - -
Lan16g0191 671 MobiDBLite consensus disorder prediction 181 205 - -
Lan16g0191 671 Gene3D - 28 160 - -
Lan16g0191 671 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0191 Lan-Chr16 1505645 1509624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0191 62 671 Response Regulator Gene Family AT3G16857 50.000 1.89e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan16g0191 Response_reg 2.3e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0191 - K14491 gmx:100809583 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0639 4 8724750 8728230 Lan16g0191 16 1505645 1509624 LSH
Lan16g0191 16 1505645 1509624 Lan19g0869 19 16155703 16159677 LSH
Lan12g0881 12 15868048 15872007 Lan16g0191 16 1505645 1509624 PCT
Lan16g0191 16 1505645 1509624 Lan12g0881 12 15868048 15872007 PCT