Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0180 ATGGCTTACCACTATAATTATAAATCCAGTTTTGGTACAAATGGTGTTTCATCAAGAGGTAGGTTACCTTCAATACCATCATCATATTCATTGGTTTTGGATGTTGAGAAAGGAGAGTTAGTGAAATCCTCTGGAAGAATATTGAGAAAGAAAGATATTTCTGAGGCCAAATCTTTAGCTGCTTTGAAGAAACATTGTGAAGCTGAGAGAAGAAGAAGGGAGAGAATTAATGGTTATCTTGCAACACTTCGTGCTCTTGTGCCTCCCACTGCAAAGACGGATAAAGCCACAATACTTGCTGAAGTTATAAGCCAATTGAAGGAATTGAAGAAGAATGCAATGGAAGCAAGCAAAGGTTTTCTAATCCCAACAGATTATGATGAAGTGAAAGTTGAACCACATGATAATAAAAATGGAGATGGGTCAATTTCTTACAAGGCATCAATATGTTGTGATGATCGACCTGGCCTATTATCTGACCTAAAACAAACTCTCGATACCCTTCAACTACAATTAGTGAAGGTAGAACTTTCGACTTTGGGAGAAAGGGTTAAGAATGTTTTTGTCTTTAAATGTTGCAAAGAGAACATCAATATTCATATTGAAACATGTCAACTTATTGCAATTTCTGTTCGTCAAGCACTAAGTTCTGTTATTAATAAAGCTTCTAGATCACAAGATTACTCACTAACATCATCATCACAGCCATGCAAGAAACCAAGACTATGCCTTCTTGAGACATCTACTTCCTCATGCAACCATGATTTTTGTTCATTTTGA 780 0.3615 MAYHYNYKSSFGTNGVSSRGRLPSIPSSYSLVLDVEKGELVKSSGRILRKKDISEAKSLAALKKHCEAERRRRERINGYLATLRALVPPTAKTDKATILAEVISQLKELKKNAMEASKGFLIPTDYDEVKVEPHDNKNGDGSISYKASICCDDRPGLLSDLKQTLDTLQLQLVKVELSTLGERVKNVFVFKCCKENINIHIETCQLIAISVRQALSSVINKASRSQDYSLTSSSQPCKKPRLCLLETSTSSCNHDFCSF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0180 259 SUPERFAMILY ACT-like 148 194 IPR045865 -
Lan16g0180 259 PANTHER DNA BINDING PROTEIN-LIKE 11 252 - -
Lan16g0180 259 Coils Coil 158 178 - -
Lan16g0180 259 SMART finulus 66 115 IPR011598 GO:0046983
Lan16g0180 259 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Lan16g0180 259 Gene3D - 55 118 IPR036638 GO:0046983
Lan16g0180 259 PANTHER TRANSCRIPTION FACTOR BHLH30 11 252 IPR045847 GO:0003700|GO:0006355
Lan16g0180 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Lan16g0180 259 Coils Coil 99 119 - -
Lan16g0180 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0180 Lan-Chr16 1407866 1412427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0180 48 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.640 4.35e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan16g0180 HLH 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0180 - - gmx:100804756 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0180 16 1407866 1412427 Lan16g0180 16 1407866 1412427 ECH