Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0179 ATGGAATCTCAAACCAAGACAAATGCCGAAGCCAACCGCAACACCACCGCCACCGATTCTCCGCCACCGTTCTCCACCCTCTCCCCACACGACATCCACCAAATGCTTCAACAATTCGACCACGACCAACTCCTCAACCTCCTCCACTCCGCCGCTCTCCGCCACGCCGACGTCCGCCTCGCGATTCGCGACCTCTCCGACCTCGACATCACTTTCCGTAGACTCTACGTCCGGTCCCTCGGCGGCGAAACCACCTCCGAAACGCTCCACCGTGTCTTCTCCTCATTCGGCGAGATCGAGGAGGCGATTGTGATCGTTGAAAAATCAACAGGGAAGTCCAAGGGTTTCGGTTTCGTAACGTTCAAGCACATGGATGGTGCATACTTGGCTCTGAAGAATCCAAGTAAGAGAATCAACGGACGAATGACGATTTCTCATCTCGCTTCTGCTGGGGTTTCACATTGGGATGACGATGTTTCTTCTAGAAAGATCTTTGTGGCGAATATTCCGTTTGTGATTCCTCCTGGTAAGTTGTTGAATCATTTTTTAAGGTATGGTGAGGTAGAGGAAGGGCCTCTTGCTTTTGATAGAGCTTGTGGAAGAGAAAAGGGTTTCGCTTTTTTCATTTATAAGACGGAAGAGGGGGCGGAAGCGGCGATTCGTGAACCTTTGAAGGTAATTGATGGGTATAAAATGCATTGTAGATTATCTGTTGAGTATAAGAAGCTAAACGCACAAACTCAAATGATGGCACCAGAATATGGTGGATATGGTAGTGGATATGGTGCTGGATATGACGGTGGATATGGTGGTGGATTTTATCAGGGTCAGGGTTATACTGCATTTTATGTTCCTCCTCCTATGGTGCTGGTGCCGCAGTTTGGTGATACCAGTGGTGGTGGTTATGGCGGCAGCAGCCGTGGTGGTGGCAGTAGCAGCAATGTTGATCCAAGGCGTGCTGCTCCACTTCCTCCAAGTTCGTCTGTTGGAGCTCCTGCAACTGCAAGTGGATCTCAGTCTCAAGGTAGCTCTTCGCATCATGAACAACAACCACAGCCCAAGCCAGCTCGCAAACGTTTGCCCCGAGGGATGTAA 1095 0.5023 MESQTKTNAEANRNTTATDSPPPFSTLSPHDIHQMLQQFDHDQLLNLLHSAALRHADVRLAIRDLSDLDITFRRLYVRSLGGETTSETLHRVFSSFGEIEEAIVIVEKSTGKSKGFGFVTFKHMDGAYLALKNPSKRINGRMTISHLASAGVSHWDDDVSSRKIFVANIPFVIPPGKLLNHFLRYGEVEEGPLAFDRACGREKGFAFFIYKTEEGAEAAIREPLKVIDGYKMHCRLSVEYKKLNAQTQMMAPEYGGYGSGYGAGYDGGYGGGFYQGQGYTAFYVPPPMVLVPQFGDTSGGGYGGSSRGGGSSSNVDPRRAAPLPPSSSVGAPATASGSQSQGSSSHHEQQPQPKPARKRLPRGM* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0179 364 Gene3D - 150 279 IPR012677 -
Lan16g0179 364 SUPERFAMILY RNA-binding domain, RBD 157 270 IPR035979 GO:0003676
Lan16g0179 364 CDD RRM_RBM24_RBM38_like 73 148 - -
Lan16g0179 364 MobiDBLite consensus disorder prediction 329 350 - -
Lan16g0179 364 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 4 328 - -
Lan16g0179 364 MobiDBLite consensus disorder prediction 295 364 - -
Lan16g0179 364 SMART rrm1_1 163 235 IPR000504 GO:0003723
Lan16g0179 364 SMART rrm1_1 74 146 IPR000504 GO:0003723
Lan16g0179 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 166 IPR000504 GO:0003723
Lan16g0179 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Lan16g0179 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 229 IPR000504 GO:0003723
Lan16g0179 364 SUPERFAMILY RNA-binding domain, RBD 66 142 IPR035979 GO:0003676
Lan16g0179 364 Gene3D - 69 145 IPR012677 -
Lan16g0179 364 PANTHER GEO13361P1-RELATED 4 328 - -
Lan16g0179 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 243 IPR000504 GO:0003723
Lan16g0179 364 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0179 Lan-Chr16 1396247 1404467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0179 145 239 C2H2 Transcription Factor Family AT2G19380 34.737 8.48e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0179 K12741 - rcu:8259223 278.485