Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0166 ATGGAGTTACCATTGAATGAGAATGACTCACAAGACATGGTGATATACCAAGTTCTGAACGAGGCAAATGCTATGAGCAACACATTTAACCCTCAAAAGCACCACCATGAAGCTCTGAGTTCTTCCCAACATGGCCTAGAACCATCAAGTAACATCACCAAGAAACACTATAGAGGGGTGAGACGCCGCCCTTGGGGGAAGTACGCGGCGGAGATACGCGACTCGGCTCGACATGGAGCAAGGGTATGGCTTGGAACGTTTCAAACTGCTGAAGAAGCTGCTATAGCTTATGATAGAGCTGCTTTTAAGATGAGAGGTTCTAAGGCTTTGCTTAACTTTCCACCTGAACTTGTTGCTGTTGCTTCTTCTATAAACTTCTCTTCTAAACTTGATTTCAAAAATAATCAAGATTCTTCTGATTCAACTTCTAGTACAAATTCTATTATTGAGGACCAATTCTAG 462 0.4242 MELPLNENDSQDMVIYQVLNEANAMSNTFNPQKHHHEALSSSQHGLEPSSNITKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAIAYDRAAFKMRGSKALLNFPPELVAVASSINFSSKLDFKNNQDSSDSTSSTNSIIEDQF* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0166 153 PANTHER DNA-BINDING DOMAIN 2 130 IPR044808 GO:0003700|GO:0009873
Lan16g0166 153 MobiDBLite consensus disorder prediction 33 56 - -
Lan16g0166 153 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Lan16g0166 153 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 2 130 - -
Lan16g0166 153 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Lan16g0166 153 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Lan16g0166 153 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Lan16g0166 153 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lan16g0166 153 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Lan16g0166 153 MobiDBLite consensus disorder prediction 134 153 - -
Lan16g0166 153 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Lan16g0166 153 CDD AP2 55 114 IPR001471 GO:0003700|GO:0006355
Lan16g0166 153 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0166 Lan-Chr16 1280116 1293289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0166 2 114 AP2-EREBP Transcription Factor Family AT4G17500 50.735 2.88e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan16g0166 AP2 8.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0166 K13433 - gmx:100811533 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0166 16 1280116 1293289 Lan16g0166 16 1280116 1293289 ECH
Lan19g0898 19 16399852 16400760 Lan16g0166 16 1280116 1293289 LSH