Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0165 ATGGCTTCTTCAAACAGACACTGGCCAAGCATGTTCAAGTCCAAACCCAAACCTTGCAACCCTCATCACCACCAATGGCAACATGACATCACTTCTTCTTTCATCTCAAATGGTTGCCACAGAAGCCCTTACACTTCAGCAGTGGGGTGTGAGGAGAGAAGTCCAGAACCAAAGCCAAGGTGGAACCCAAAACCTGAGCAAATTAGGATACTTGAAGCAATATTCAACTCTGGAATGGTTAATCCTCCAAGAGATGAAATAAGAAAGATAAGGGCACAGTTGCAAGAGTATGGTCAAGTTGGTGATGCTAATGTCTTCTACTGGTTCCAGAACCGAAAATCAAGGAGCAAGCACAAACTCAGACAACAACTCCAGAACTCAAAGAACAATTACCAAAACATTAACCAACCCGAACAACAACAAAAACATGACACTGTTTCTCAACTCTCTCAAGTCACTGCACCTTCATCTTCTTCCACTTCCTCTGATCAGAAATCCTCACGAAAAGAAGTAATACAACCTAAGGTATTCTCTATTGGCTTCTCTAGGGTCAGTGATGTTGTGTTGCCTAATTCTCCAACTCTTTCTGTGAACCAAAACTATTTACCACCACCATTATCTGAAGGGTTCTTATTCCCAGTGCAACATCATGGACAAGGATTATTACCTAATAATAATAATAATAATGATACCATATCTTCATCATCACAAGGATTTTGCTTTTCTGAGCTTTCTAGTGTTGTTCAATCTCAACAACCACATGGTCAGCATAATGTTGGTCCTTGCACCAGTCTCTTATTGAGTGAGATAATGAACCATGGTGCAGCTTCTTCCAAAAGAGATCGAGTTCAAGACAAGAATGTGAAAGTAATTCACCCTTATTCACACCTCAGTTTCTGTGTCACTCCTACTACACCACTTCACACCGCCACCACCGTTGTCCCTCCTCCCATCACAACCACCTCAGTTACTGTTCCATCCCCCATAAATTTCTCTCAACTTGAAGGCATTGGAGATGCAGGTGTGACTCCAAAATCAATGGTGTTCATCAATGATGTAGCATTTGAAGTAGCGGTTGGACCTTTCAACGTTCGAGAGGCCTTTGGTGATAATGCAATGCTAATCCACCCTAATGGTCACCCTGTTCCTACAAACCAGTGGGGTCTAACCCTTCACTCACTGCACCATGGTGCATCTTATTACTTGATAATGTAG 1215 0.423 MASSNRHWPSMFKSKPKPCNPHHHQWQHDITSSFISNGCHRSPYTSAVGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRQQLQNSKNNYQNINQPEQQQKHDTVSQLSQVTAPSSSSTSSDQKSSRKEVIQPKVFSIGFSRVSDVVLPNSPTLSVNQNYLPPPLSEGFLFPVQHHGQGLLPNNNNNNDTISSSSQGFCFSELSSVVQSQQPHGQHNVGPCTSLLLSEIMNHGAASSKRDRVQDKNVKVIHPYSHLSFCVTPTTPLHTATTVVPPPITTTSVTVPSPINFSQLEGIGDAGVTPKSMVFINDVAFEVAVGPFNVREAFGDNAMLIHPNGHPVPTNQWGLTLHSLHHGASYYLIM* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0165 404 MobiDBLite consensus disorder prediction 1 24 - -
Lan16g0165 404 MobiDBLite consensus disorder prediction 137 167 - -
Lan16g0165 404 CDD homeodomain 57 119 IPR001356 GO:0003677
Lan16g0165 404 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 403 - -
Lan16g0165 404 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 403 IPR044557 GO:0003700|GO:0050793
Lan16g0165 404 Gene3D - 58 126 - -
Lan16g0165 404 MobiDBLite consensus disorder prediction 45 64 - -
Lan16g0165 404 Pfam Homeodomain 58 118 IPR001356 GO:0003677
Lan16g0165 404 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677
Lan16g0165 404 MobiDBLite consensus disorder prediction 137 169 - -
Lan16g0165 404 SMART HOX_1 56 123 IPR001356 GO:0003677
Lan16g0165 404 SUPERFAMILY Homeodomain-like 54 123 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0165 Lan-Chr16 1276841 1279307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0165 1 404 Wox Gene Family AT2G33880 42.923 4.74e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lan16g0165 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0165 - - cam:101490093 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0165 16 1276841 1279307 Lan16g0165 16 1276841 1279307 ECH
Lan4g0663 4 9193311 9195867 Lan16g0165 16 1276841 1279307 LSH