Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0155 ATGGTTGGTGGCATGAATGTTAAAGACATGAAGGAAGTGCATTTTCGTGGCGTAAGAAAGAGACCATGGGGTAGATACGCTGCAGAGATAAGAGATCCAACTAAGAAGACACGTCTTTGGCTCGGCACCTTCGATACGCCGGAAGAGGCGGCTGCAGCCTATGACGCCGCCGCACGCAACTTCCGTGGCCCTAAGGCTAAAACCAATTTCCCTCTCTCCTCTGTCTCCGACAACCTTAACAACCCAACATACACCAACATCGTTGTCTCTAATTCTACACCGTTGGATCTTAACTTGGCCCCACCCACCGTCCGTTATCCCTTTCACTACCACCTCGCCGCGAATAAGGGTTTGTTCTTCGATGCGGTGGGTCCCAGTTCAGGAAGAGTTTTTGGGCATTATAATTATAATAATCAAGTTGCAGCGGGTGCACATAGCAATTCACACTCATCCACCATGATTGATCTGAATCATTATGATCGTGATTTAAACTCTGTAAGAGTTTTTGATATTGATCTTAACAAACCTCCTCCACAAGAATATGCATGA 549 0.4645 MVGGMNVKDMKEVHFRGVRKRPWGRYAAEIRDPTKKTRLWLGTFDTPEEAAAAYDAAARNFRGPKAKTNFPLSSVSDNLNNPTYTNIVVSNSTPLDLNLAPPTVRYPFHYHLAANKGLFFDAVGPSSGRVFGHYNYNNQVAAGAHSNSHSSTMIDLNHYDRDLNSVRVFDIDLNKPPPQEYA* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0155 182 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Lan16g0155 182 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Lan16g0155 182 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 107 - -
Lan16g0155 182 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Lan16g0155 182 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Lan16g0155 182 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Lan16g0155 182 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Lan16g0155 182 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Lan16g0155 182 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Lan16g0155 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 11 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0155 Lan-Chr16 1221266 1221867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0155 11 121 AP2-EREBP Transcription Factor Family AT5G44210 56.911 2.03e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan16g0155 AP2 8.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0155 16 1221266 1221867 Lan16g0155 16 1221266 1221867 ECH
Lan8g1377 8 20669583 20670562 Lan16g0155 16 1221266 1221867 ECH
Lan19g0918 19 16570462 16571386 Lan16g0155 16 1221266 1221867 LSH