Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0154 ATGTTCATGGCTTCATCTTCTTCTTCTTCTACTACCTCACGTGAGGGTCACTACAGAGGAGTTCGAAAGAGACCATGGGGTCGTTACGCTGCTGAGATTCGCGATCCTTGGAAGAAGACACGTGTCTGGCTTGGTACTTTCGATACTCCTGAACAAGCTGCACTTGCTTACGACGGCGCCGCCCGTTCCCTCCGTGGATCTAAGGCCAAGACCAACTTCCCTCCTCCTCCTCCTTCTCTCTCCCTTGACCTCAACGTTCCTTCCTCTCTACTCCCCTCTCCTGCACCTTCTCTCACTCACTTTCTTCACACCGCCGTTCTCAAAGCTGCTGACCCACTCACTCTTCCTCCGCCGCCACCAACGCTGCCTTTTACTCACCACCACCGTGTTCATCTTAGCGGTGGAGGTGGGGTCCAGATTAATGATGGTTCTCCCACGGCGTCGTATTTGGGTCTAGTTCGACGTGGCATACCCATCGATCTCAATGAACCTCCACCATTGTGGCTATGA 510 0.5353 MFMASSSSSSTTSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEQAALAYDGAARSLRGSKAKTNFPPPPPSLSLDLNVPSSLLPSPAPSLTHFLHTAVLKAADPLTLPPPPPTLPFTHHHRVHLSGGGGVQINDGSPTASYLGLVRRGIPIDLNEPPPLWL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0154 169 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Lan16g0154 169 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Lan16g0154 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 16 85 - -
Lan16g0154 169 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Lan16g0154 169 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677
Lan16g0154 169 MobiDBLite consensus disorder prediction 1 20 - -
Lan16g0154 169 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Lan16g0154 169 MobiDBLite consensus disorder prediction 1 15 - -
Lan16g0154 169 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Lan16g0154 169 CDD AP2 17 73 IPR001471 GO:0003700|GO:0006355
Lan16g0154 169 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Lan16g0154 169 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0154 Lan-Chr16 1210608 1211487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0154 8 169 AP2-EREBP Transcription Factor Family AT1G28360 49.239 7.11e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan16g0154 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0154 - - gmx:100802655 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0154 16 1210608 1211487 Lan16g0154 16 1210608 1211487 ECH
Lan19g0919 19 16584865 16585721 Lan16g0154 16 1210608 1211487 LSH