Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0151 ATGGAAGGAAACTGGGCTGAAGGAAAGAGAACCTTGGAGTATGATGATTATGAAGAAGAAGAAGAAGAAGATGATGTAGTGATAAGTGAGATAATAAGTAATGGAGATGAAGGAAAGAATAAGAAAAGGGCAATGACTAGAGATTTTTGTAGCAGCAAAAGAGGGTCCAAAGCAGGAGGATCAGTGCCACCTTCTTGTCAAGTTGATAGTTGCAAAACTGATCTAAGTGATGCTAAGCAATATCATAGAAGGCACAAGGTTTGTGAGTACCATGCCAAAGCTCCTTTTGTTCTTATAGCAGATCATCAACAAAGGTTTTGTCAGCAATGTAGCAGGTTCCATGATCTGTCAGAATTTGATGAGTCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACATAATGAAAGGCGTCGCAAAAATGCAGTTGATTGTTACGGAGAATGA 444 0.3964 MEGNWAEGKRTLEYDDYEEEEEEDDVVISEIISNGDEGKNKKRAMTRDFCSSKRGSKAGGSVPPSCQVDSCKTDLSDAKQYHRRHKVCEYHAKAPFVLIADHQQRFCQQCSRFHDLSEFDESKRSCRRRLAGHNERRRKNAVDCYGE* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0151 147 Gene3D - 56 127 IPR036893 GO:0003677|GO:0005634
Lan16g0151 147 PIRSF SBP 2 147 IPR017238 GO:0003677|GO:0003700|GO:0009908
Lan16g0151 147 MobiDBLite consensus disorder prediction 1 25 - -
Lan16g0151 147 Pfam SBP domain 66 139 IPR004333 GO:0003677
Lan16g0151 147 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Lan16g0151 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 21 140 - -
Lan16g0151 147 SUPERFAMILY SBT domain 64 144 IPR036893 GO:0003677|GO:0005634
Lan16g0151 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 140 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0151 Lan-Chr16 1187076 1190229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0151 66 143 SBP-box Gene Family AT2G33810 75.641 1.67e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan16g0151 SBP 1.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0675 4 9276061 9277784 Lan16g0151 16 1187076 1190229 LSH
Lan19g0922 19 16614629 16617936 Lan16g0151 16 1187076 1190229 LSH