Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0149 ATGAAGTTCAATATTGCAAACCCTACCACTGGATGCCAGAAGAAGCTTGAAATCGATGATGACCTGAAGCTCCGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTCTTGGTGATGCTTTGGGTGAGGAATTCAAAGGCTATGTCTTCAAAATCACTGGAGGTTGTGACAAACAAGGGTTTCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTCCATAGAGGAACTCCTTGTTTCCGTGGATATGGGAGACGCACTGGAGAGCGCAGGAGGAAGTCTGTTCGCGGGTGCATTGTCAGCCCAGACCTCTCGGTTCTGAACTTGGTGATTGTGAAGAAGGGTGACAATGATTTACCAGGGCTGACAGACATTGAAAAGCCAAGGATGAGGGGTCCTAAGAGAGCATCTAAAATCCGTAAGCTGTTCAACCTTTCCAAGGAAGATGATGTGAGGAAGTATGTCAACACTTACCGTCGAACATTTACAACCAAAAATGGCAAAAAGGTGAGCAAAGCTCCAAAGATTCAACGACTGGTCACTCCCCTGACTCTTCAAAGAAAGAGGGCAAGAATTGCAGATAAGAAGAAGAGAATTGCGAAAGCTAAATCAGATGCAGCAGAGTACCAGAAACTTCTCGCGTCCAGGTTGAAGGAGCAGAGAGAAAGGAGAAGCGAGAGTCTGGCTAAGAAGAGATCAAGGCTGTCCAGTGCTACCAAGCAACCTGCAACAGCATAG 750 0.472 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKKRSRLSSATKQPATA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0149 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 - -
Lan16g0149 249 MobiDBLite consensus disorder prediction 220 249 - -
Lan16g0149 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan16g0149 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Lan16g0149 249 Coils Coil 189 216 - -
Lan16g0149 249 Gene3D - 133 234 - -
Lan16g0149 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan16g0149 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan16g0149 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lan16g0149 249 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0149 Lan-Chr16 1170377 1172674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0149 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.092 1.11e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0149 K02991 - gmx:100801194 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0385 19 4833294 4836117 Lan16g0149 16 1170377 1172674 LSH
Lan6g0729 6 6632653 6634897 Lan16g0149 16 1170377 1172674 PCT
Lan16g0149 16 1170377 1172674 Lan6g0729 6 6632653 6634897 PCT