Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0148 ATGGATTACAAACAAAAGGACTGTGCGGGTGCAGCAGATGGGAAACCTGTTGATGAAAATGTGGAGTCTTTCCTCTCTTTGGAAAATGAACATGCTGATCATAGAATTGTGCCTTTCAGCAATCTGAAACGTATTTCAAATTCATACAGTAGAAATGAAAATAAAGGTTTTTCATTTGAAGAGGTTGGTTGCCTTCATTCAAGCAAAAGCAAGGTTTTGTCCAGCCATTTTTCATCCGATGGAAAGATTTTGGCAAGTGCTGGACATGAGAAAAAGGTTTTCATTTGGAACATGGAAACTTTTGATTGTGCTACTACTGCAGAAGCACATTCACTTCTCATCACAGATGTTCGGTTCAGAAATGGTTCCACTATCTTTGCAACGTCCTCCTTTGATAGATCTGTAAGACTGTGGGATGCAGCCAGACCTACTAGATCATTGCTCAAACTTGATGGGCATGCTGAACAAGTAATGTCATTGGATTTCCACCCAAGAAAGGTGGACCTTCTATGCTCATCTGATAGCAATGACGTAATTCGGCTGTGGAATGTCAAACAAGGTGCATGCATGCATGTCACTAAGGGAGGTAGTAAACAAGTCAGATTTCAGCCTGATTTTGGGAAGCTTCTTGCCACTGCTACAGGAAATGATATCAAGATAGTTGACGTTGAGGCTGATAGAATTCTGTGCAATCTAAATGGACATGTTAAAGATGTTATTTCCATTTGTTGGGATAGAAGTGGAAACTATATTGCCTCCGTAAGTGAAGATAGTGCGCGTATCTGGTCAACAGATGGAAAATGCATCCATGAATTACATTCAAATGGAAACAAGTTCCAATCGTGCATATTTCATCCAGCCTATCAAAACCTCTTGGTTATTGGTGGCTATCAGTATCTTGAATTATGGAGTCCGACCGAAGGCAATAAAACATGGGCTGTTGCAGCACACGAGGGATTAATTGCTGGATTAGCAGAATCACCCCATGGTGAACTGATTGCCTCAGCTAGCCATGATTGTTGTGTGAAACTATGGAAATAA 1041 0.4073 MDYKQKDCAGAADGKPVDENVESFLSLENEHADHRIVPFSNLKRISNSYSRNENKGFSFEEVGCLHSSKSKVLSSHFSSDGKILASAGHEKKVFIWNMETFDCATTAEAHSLLITDVRFRNGSTIFATSSFDRSVRLWDAARPTRSLLKLDGHAEQVMSLDFHPRKVDLLCSSDSNDVIRLWNVKQGACMHVTKGGSKQVRFQPDFGKLLATATGNDIKIVDVEADRILCNLNGHVKDVISICWDRSGNYIASVSEDSARIWSTDGKCIHELHSNGNKFQSCIFHPAYQNLLVIGGYQYLELWSPTEGNKTWAVAAHEGLIAGLAESPHGELIASASHDCCVKLWK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0148 346 ProSitePatterns Trp-Asp (WD) repeats signature. 170 184 IPR019775 -
Lan16g0148 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 346 - -
Lan16g0148 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 192 IPR001680 GO:0005515
Lan16g0148 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 346 IPR001680 GO:0005515
Lan16g0148 346 SMART WD40_4 225 263 IPR001680 GO:0005515
Lan16g0148 346 SMART WD40_4 307 346 IPR001680 GO:0005515
Lan16g0148 346 SMART WD40_4 58 97 IPR001680 GO:0005515
Lan16g0148 346 SMART WD40_4 265 304 IPR001680 GO:0005515
Lan16g0148 346 SMART WD40_4 143 183 IPR001680 GO:0005515
Lan16g0148 346 SMART WD40_4 100 139 IPR001680 GO:0005515
Lan16g0148 346 SMART WD40_4 186 222 IPR001680 GO:0005515
Lan16g0148 346 Gene3D - 36 201 IPR015943 GO:0005515
Lan16g0148 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 150 187 - -
Lan16g0148 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 139 IPR001680 GO:0005515
Lan16g0148 346 CDD WD40 61 346 - -
Lan16g0148 346 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 47 346 IPR044716 GO:0003714
Lan16g0148 346 Pfam WD domain, G-beta repeat 70 97 IPR001680 GO:0005515
Lan16g0148 346 Pfam WD domain, G-beta repeat 230 263 IPR001680 GO:0005515
Lan16g0148 346 Pfam WD domain, G-beta repeat 104 139 IPR001680 GO:0005515
Lan16g0148 346 Pfam WD domain, G-beta repeat 315 346 IPR001680 GO:0005515
Lan16g0148 346 Pfam WD domain, G-beta repeat 147 183 IPR001680 GO:0005515
Lan16g0148 346 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 47 346 - -
Lan16g0148 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 139 - -
Lan16g0148 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 106 IPR001680 GO:0005515
Lan16g0148 346 SUPERFAMILY WD40 repeat-like 59 346 IPR036322 GO:0005515
Lan16g0148 346 Gene3D - 202 346 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0148 Lan-Chr16 1166465 1169164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0148 83 262 U-box Gene Family AT2G33340 25.000 1.29e-13 69.7