Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0147 ATGGCTTCAAAAGGTGATGATCTCTCAGAATGGAACGCTGATAAATTGCTTCGAATATATATGCATGAATACATGTTGAAAAGAGGATTGCACCATAGCGCTGAGACTTTCAAGGAAGAAAGCCAAATCGGTGACAAAGATTCCACTGTGATTGATTCTCCTAATGGATTCCTGCATGAATGGTGGTCTGTTTTCTATGGTGATGTATATAGCTCCTGGATGGTGAAGGATCAGGAGAATGTTCCAGAATCCTCTAGTAAGATAGCAGATAATGCAAGGAATGGTAATTCCTTTCCTATAATCCCTCAAATACCAATGAGTCAGCAGAGACCTTTACCTCATCAATTTCAAGATAGCTCCATGCTGGCACAACCAGCTACTGGTCTAATACCTTCAACACTGTACCATAAAGAACATCTTGAGCATCTGGTGGGAAATGGCGAGCCAAGTTTGCAGGATACTTTGGAAGCAAGTAACCTGAGGTTCTCGGCTGAGAGTAGTTCAAATGATTCCCTGCTAGATGTAGGCAAGCAGAACCAGAACAAAATCTTTAAGGATAGTGGAATTGGCATCCGTTCGGTGAAAGATGTACCTAGAGACCCTCTGCAATTAGTACAACCAAAAACCAGTGAAGCTCTCAATCTATCGCCACTAAATGGATGGCCAAGAAATGTAGGTGACGGAAACCAGGTATTAATTTCACTTGTGCACGAACCAAATTATAAGCATCAGTGTCAAGTGTTGAAAACACCAAATCCGGGATCAGTTCCTGCTCGAACACTTCAGTCTGCTCCAGCAAGCCAAACTTTTACTGTTCCTGCATACTCTACCAAATACAGCAGCCAGTATTTGAAGACTCCAAGTCCAAAGACTGAATCAAATAATAAGGATAAGCAGGACTGTGCGGGTGCAGCAGATGGGAAACCTGTTGATGAAAATGTGGAGTCTTTCCTCTCTTTGGAAAATGAACATGCTGATCATAGAATTGTGCCTTTCAGCAATCTGAAACGTATTTCAAATTCATACAGTAGAAATGAAAATAAAGGTTTTTCATTTGAAGAGGTTGGTTGCCTTCATTCAAGCAAAAGCAAGGTTTTGTCCAGCCATTTTTCATCCGATGGAAAGATTTTGGCAAGTGCTGGACATGAGAAAAAGGTTTTCATTTGGAACATGGAAACTTTTGATTGTGCTACTACTGCAGAAGCACATTCACTTCTCATCACAGATGTTCGGTTCAGAAATGGTTCCACTATCTTTGCAACGTCCTCCTTTGATAGATCTGTAAGACTGTGGGATGCAGCCAGACCTACTAGATCATTGCTCAAACTTGATGGGCATGCTGAACAAGTAATGTCATTGGATTTCCACCCAAGAAAGGTGGACCTTCTATGCTCATCTGATAGCAATGACGTAATTCGGCTGTGGAATGTCAAACAAGGTGCATGCATGCATGTCACTAAGGGAGGTAGTAAACAAGTCAGATTTCAGCCTGATTTTGGGAAGCTTCTTGCCACTGCTACAGGAAATGATATCAAGATAGTTGACGTTGAGGCTGATAGAATTCTGTGCAATCTAAATGGACATGTTAAAGATGTTATTTCCATTTGTTGGGATAGAAGTGGAAACTATATTGCCTCCGTAAGTGAAGATAGTGCGCGTATCTGGTCAACAGATGGAAAATGCATCCATGAATTACATTCAAATGGAAACAAGTTCCAATCGTGCATATTTCATCCAGCCTATCAAAACCTCTTGGTTATTGGTGGCTATCAGTATCTTGAATTATGGAGTCCGACCGAAGGCAATAAAACATGGGCTGTTGCAGCACACGAGGGATTAATTGCTGGATTAGCAGAATCACCCCATGGTGAACTGATTGCCTCAGCTAGCCATGATTGTTGTGTGAAACTATGGAAATAA 1920 0.4141 MASKGDDLSEWNADKLLRIYMHEYMLKRGLHHSAETFKEESQIGDKDSTVIDSPNGFLHEWWSVFYGDVYSSWMVKDQENVPESSSKIADNARNGNSFPIIPQIPMSQQRPLPHQFQDSSMLAQPATGLIPSTLYHKEHLEHLVGNGEPSLQDTLEASNLRFSAESSSNDSLLDVGKQNQNKIFKDSGIGIRSVKDVPRDPLQLVQPKTSEALNLSPLNGWPRNVGDGNQVLISLVHEPNYKHQCQVLKTPNPGSVPARTLQSAPASQTFTVPAYSTKYSSQYLKTPSPKTESNNKDKQDCAGAADGKPVDENVESFLSLENEHADHRIVPFSNLKRISNSYSRNENKGFSFEEVGCLHSSKSKVLSSHFSSDGKILASAGHEKKVFIWNMETFDCATTAEAHSLLITDVRFRNGSTIFATSSFDRSVRLWDAARPTRSLLKLDGHAEQVMSLDFHPRKVDLLCSSDSNDVIRLWNVKQGACMHVTKGGSKQVRFQPDFGKLLATATGNDIKIVDVEADRILCNLNGHVKDVISICWDRSGNYIASVSEDSARIWSTDGKCIHELHSNGNKFQSCIFHPAYQNLLVIGGYQYLELWSPTEGNKTWAVAAHEGLIAGLAESPHGELIASASHDCCVKLWK* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0147 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 399 IPR001680 GO:0005515
Lan16g0147 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 432 IPR001680 GO:0005515
Lan16g0147 639 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 639 IPR044716 GO:0003714
Lan16g0147 639 MobiDBLite consensus disorder prediction 291 305 - -
Lan16g0147 639 Pfam LisH 20 41 IPR006594 GO:0005515
Lan16g0147 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 639 IPR001680 GO:0005515
Lan16g0147 639 MobiDBLite consensus disorder prediction 282 308 - -
Lan16g0147 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 485 IPR001680 GO:0005515
Lan16g0147 639 Gene3D - 494 639 IPR015943 GO:0005515
Lan16g0147 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 480 - -
Lan16g0147 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 432 - -
Lan16g0147 639 SUPERFAMILY WD40 repeat-like 352 639 IPR036322 GO:0005515
Lan16g0147 639 ProSiteProfiles LIS1 homology (LisH) motif profile. 13 45 IPR006594 GO:0005515
Lan16g0147 639 ProSitePatterns Trp-Asp (WD) repeats signature. 463 477 IPR019775 -
Lan16g0147 639 CDD WD40 354 639 - -
Lan16g0147 639 Pfam WD domain, G-beta repeat 608 639 IPR001680 GO:0005515
Lan16g0147 639 Pfam WD domain, G-beta repeat 440 476 IPR001680 GO:0005515
Lan16g0147 639 Pfam WD domain, G-beta repeat 397 432 IPR001680 GO:0005515
Lan16g0147 639 Pfam WD domain, G-beta repeat 363 390 IPR001680 GO:0005515
Lan16g0147 639 Pfam WD domain, G-beta repeat 523 556 IPR001680 GO:0005515
Lan16g0147 639 SMART WD40_4 351 390 IPR001680 GO:0005515
Lan16g0147 639 SMART WD40_4 479 515 IPR001680 GO:0005515
Lan16g0147 639 SMART WD40_4 600 639 IPR001680 GO:0005515
Lan16g0147 639 SMART WD40_4 518 556 IPR001680 GO:0005515
Lan16g0147 639 SMART WD40_4 436 476 IPR001680 GO:0005515
Lan16g0147 639 SMART WD40_4 393 432 IPR001680 GO:0005515
Lan16g0147 639 SMART WD40_4 558 597 IPR001680 GO:0005515
Lan16g0147 639 Gene3D - 333 493 IPR015943 GO:0005515
Lan16g0147 639 SMART Lish 13 45 IPR006594 GO:0005515
Lan16g0147 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0147 Lan-Chr16 1158284 1165360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0147 375 638 Miscellaneous Gene Families AT5G08390 21.942 2.02e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lan16g0147 WD40 0.0083 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0147 - - lang:109345600 887.871