Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0134 ATGGCGTTTGAGCACTACGTTCCCCCGGAATGTAAAAGCAAAAGCATTCCCAATGCTGTGACAGAAACAGAAAATTATAATGGTTGTTTCGATTGCAACATTTGCTTAGATTTCGCATATGAACCAGTAGTCACTTTTTGTGGCCACCTTTACTGCTGGCCTTGCATCTACAAGTGGCTTCATGTCCAGAGTGATTCTCTTGCACCCGATGAGCACCCACAATGCCCTGTCTGCAAGGCTGATATATCCCACACCACAATGGTCCCACTCTATGGCCGCGGCCAGGCCTCGACTCAAAGTCACCATGATGGAAAAGCGTCCACTTGTTGCGATATTTTTGTACCACATAGACCTTCAGCTTCTAGTGCTCAAGCTCTTATGGCAACATCATCTCAAAGTGGTCAACAGCATCCACACCACGATCCTTATCCGGGTCACCATGAAGAGGATGCCGGCCCGGAAATGCTCAATCCAGGATACCATAACCCTGCGGTTGGCATGTTTGGCGAGATGATTTATGCTAGAGTGTTTGGCAACTCAGAAAATTCGAATGCCCACCCGAATTCTTATCAGCTCATGGGAAGTAATAGCACTAGATTAGGAAGGCAAGAGATGCTGGTAGAGAAATCACTGAACAGAATTTCGATTTTTCTTTTTTGCTGCTTTCTTTTGTGTCTTATTGTCTTCTAA 690 0.4551 MAFEHYVPPECKSKSIPNAVTETENYNGCFDCNICLDFAYEPVVTFCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKADISHTTMVPLYGRGQASTQSHHDGKASTCCDIFVPHRPSASSAQALMATSSQSGQQHPHHDPYPGHHEEDAGPEMLNPGYHNPAVGMFGEMIYARVFGNSENSNAHPNSYQLMGSNSTRLGRQEMLVEKSLNRISIFLFCCFLLCLIVF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0134 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 92 IPR013083 -
Lan16g0134 229 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Lan16g0134 229 CDD RING-HC_AtRMA_like 30 80 - -
Lan16g0134 229 ProSiteProfiles Zinc finger RING-type profile. 32 79 IPR001841 -
Lan16g0134 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan16g0134 229 MobiDBLite consensus disorder prediction 124 138 - -
Lan16g0134 229 SMART ring_2 32 78 IPR001841 -
Lan16g0134 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 229 - -
Lan16g0134 229 Pfam Zinc finger, C3HC4 type (RING finger) 32 78 IPR018957 GO:0046872
Lan16g0134 229 SUPERFAMILY RING/U-box 27 91 - -
Lan16g0134 229 MobiDBLite consensus disorder prediction 124 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0134 Lan-Chr16 1028448 1030655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0134 13 215 C3H Transcription Factor Family AT4G27470 39.545 8.24e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0134 K10666 - gmx:100816864 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0684 4 9323647 9326055 Lan16g0134 16 1028448 1030655 LSH
Lan19g0940 19 16763016 16765064 Lan16g0134 16 1028448 1030655 LSH