Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0128 ATGACTTGTTGCTGCTTTCGATCCACGAGTACGAAGAAGGACACGAGCTCTTCTCATACCCCGAAAGAAATTCATGGCCATCCCCTAAATAATGTTAGGCATTTCTCTGATAAAGAACTGATATCAGCAACCGATAATTATCATTTGAGCAATAAGATAGGACGAGGAGGTTTTGGAACTGTTTTCAAGGGAACCTTAAAAGATGGAAGGCAAGTGGCAGTGAAAACCCTTTCAGCTAGTTCAAAGCAGGGAGTCGGTGAATTTTTAAGCGAAATTAAGACTTTGTCAAATGTTAAGCATCCGAACCTTGTTGAATTGATTGGATGCTGCGTTCAAGGACCAAGTCGGGCGTTAGTCTACGAGCATGTGGAAAATGGCAGCCTTGATAGTGCATTACTTGGCACAAGGAGTGCAAACATTCAACTAGACTGGAAAAAAAGATCTGCTATCTGTGTCGGTACAGCTAAGGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACATATTGTGCATAGAGACATTAAAGCTAGTAATGTACTACTTGACAGAGACTTCAATCCAAAAATAGGTGATTTTGGGCTAGCTAAATTATTTCCAGATGACATCACTCACATAAGCACAAAAATCGCTGGAACAACTGGTTACTTGGCACCAGAATATGCGTTAGGTGGCCAATTAACTATGAAGGCTGATGTGTACAGCTTTGGGGTTCTTATGCTTGAGATAATTAGTGGCAAAAGCAGTTCCAAGACAAACAGGGGAGAGCCACACAAATTGTTCTTGGAATGGGCCTGGCAACTTTATGAAGAGGGGAAAATGTTGGAGCTTGTAGATCCAGAAATGAAAGAATATCCCGAGAAAGAGGTAATTAAGTACATCAAAGTAGCATTTTTCTGTACACAATCAGTAGCAAGTAGAAGGCCATTGATGACCCAAGTGGTTGATATGCTCTCCAAGGAAATCCAGCTCAATGACAAGCAAATTGCAGCACCAGGATTCTTCATGGATTCAAGAGAGTCGTCTCTAAAGAAGTCGCCCTCTGATTCTATAATCGCTCAGTTTAGCAATTCATCTGTCAGTATTACTCAGGTGACCGCGCGATGA 1104 0.4167 MTCCCFRSTSTKKDTSSSHTPKEIHGHPLNNVRHFSDKELISATDNYHLSNKIGRGGFGTVFKGTLKDGRQVAVKTLSASSKQGVGEFLSEIKTLSNVKHPNLVELIGCCVQGPSRALVYEHVENGSLDSALLGTRSANIQLDWKKRSAICVGTAKGLAFLHEELVPHIVHRDIKASNVLLDRDFNPKIGDFGLAKLFPDDITHISTKIAGTTGYLAPEYALGGQLTMKADVYSFGVLMLEIISGKSSSKTNRGEPHKLFLEWAWQLYEEGKMLELVDPEMKEYPEKEVIKYIKVAFFCTQSVASRRPLMTQVVDMLSKEIQLNDKQIAAPGFFMDSRESSLKKSPSDSIIAQFSNSSVSITQVTAR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0128 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lan16g0128 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lan16g0128 367 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Lan16g0128 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 364 - -
Lan16g0128 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0128 367 MobiDBLite consensus disorder prediction 7 29 - -
Lan16g0128 367 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Lan16g0128 367 Pfam Protein tyrosine and serine/threonine kinase 48 316 IPR001245 GO:0004672|GO:0006468
Lan16g0128 367 PIRSF ILK 10 329 - -
Lan16g0128 367 CDD STKc_IRAK 53 319 - -
Lan16g0128 367 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0128 367 SUPERFAMILY Protein kinase-like (PK-like) 25 317 IPR011009 -
Lan16g0128 367 PANTHER - 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0128 Lan-Chr16 1003534 1007398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0128 35 336 Receptor kinase-like Gene Family AT1G56120 53.642 1.60e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lan16g0128 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0128 - - gmx:100788143 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0700 17 6216842 6221734 Lan16g0128 16 1003534 1007398 PCT
Lan16g0128 16 1003534 1007398 Lan17g0700 17 6216842 6221734 PCT