Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0115 ATGAATGACTTATTCTCAAGTTCCTTCAAAAAATACACTGATTTGAGGGAACAAACTCACCTTGATGATGTGGAGGCAGGGAAAGAAACTGTTAATCTTGATAAATTCTTTGAAGATGTAGAGAATGTAAAAGAAGAAATGAGAGTGGTTGAGAAGCTTTATAGAAAATTGCAAGAGGCTAATGAAGAAAGCAAAATTGTTCATAATGCTAAAACCATGAAGGATCTTCGAGCGCGAATGGATAAAGATGTTGAGCAAGTTCTTAAACAAGTTAAGATGATTAAAGGAAAGCTTGAAGCATTAGAGAGATCCAATGCTGCAAATAGAAATATTGCAGGGTGTGGTCCAGGTTCTTCAGCAGATAGAACAAGAACTTCAGTGGTTAGTGGCTTGGGGAAGAAGTTAAAGGATATGATGGATGATTTTCAAGGGTTAAGAGCAAGAATGCAACTTGAATACAAGGAAACAGTTGAAAGAAGGTATTTTACAATAACAGGAGAAAAAGCAGATGAAGAAACTATAGAGAATTTAATATCAAGTGGAGAAAGTGAAAGTTTTCTTCAAAGGGCTATTCAAGAACAAGGTAGGGGTCAAATAATGGATACAATATCAGAAATTCAAGAAAGACATGATGCTGTTAAAGAGATAGAGAAAAACTTGATTGAGTTACATCAAGTGTTTTTGGATATGGCAGCTCTTGTAGAATCTCAAGGCCAACAACTCAATAACATAGAGAGTCATGTAGCACATGCAAGTTCATTTGTTAGAAGAGGCACAGAACAACTTCAAGAAGCAAGAGAGCAACAAAAAAGTTCTAGGAAATGGACATGCTATGCTATTATTCTTGGTATTGTTCTCATCATTGTGATTTTGTTTCCTCTTTTGACAGCAATTTTACCTCATTTGATATTAAAATAA 918 0.3486 MNDLFSSSFKKYTDLREQTHLDDVEAGKETVNLDKFFEDVENVKEEMRVVEKLYRKLQEANEESKIVHNAKTMKDLRARMDKDVEQVLKQVKMIKGKLEALERSNAANRNIAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQLEYKETVERRYFTITGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEAREQQKSSRKWTCYAIILGIVLIIVILFPLLTAILPHLILK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0115 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lan16g0115 305 CDD SNARE_syntaxin1-like 202 264 - -
Lan16g0115 305 Gene3D - 30 162 - -
Lan16g0115 305 SMART SynN_4 28 154 IPR006011 GO:0016020
Lan16g0115 305 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Lan16g0115 305 Coils Coil 84 104 - -
Lan16g0115 305 CDD SynN 33 190 IPR006011 GO:0016020
Lan16g0115 305 Pfam SNARE domain 240 291 IPR000727 -
Lan16g0115 305 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan16g0115 305 PANTHER T-SNARE-RELATED 11 296 - -
Lan16g0115 305 PANTHER SYNTAXIN 11 296 IPR045242 -
Lan16g0115 305 SMART tSNARE_6 198 265 IPR000727 -
Lan16g0115 305 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Lan16g0115 305 Coils Coil 33 70 - -
Lan16g0115 305 Gene3D - 194 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0115 Lan-Chr16 893059 899018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0115 1 304 SNARE and Associated Proteins AT1G61290 78.947 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0115 K08486 - gmx:100818999 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0709 4 9462282 9464164 Lan16g0115 16 893059 899018 LSH
Lan19g0971 19 17128345 17130165 Lan16g0115 16 893059 899018 LSH
Lan18g0589 18 10827135 10828494 Lan16g0115 16 893059 899018 PCT
Lan16g0115 16 893059 899018 Lan18g0589 18 10827135 10828494 PCT