Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0114 ATGACTTCAATTACTTCGTCAAATTTGTTGTGTTTCAATCCTGAGTGCAAAGAATTCAAATCTGATAGACCTAAGAAAGGTTGGAGACTACGTACCGGTGACCTAGCTGAGCTTTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACTCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGGGGATTCACTGTGGATGTATTGTTTCAAGTCATGCCTTTGTGTTGTTGGATCCTGGAGGAATTGAATGCTTTGCATGTGCCCGCAAACATATTCTTTTGCCATCTAACCCAACATGGCCACCATCTTTTTCCCTTCAAAATCGTTTATCTGAGAGACTTAGAGACATGTCTGCAAAAAGTTGGAGTCAATTAGCTGGGTCCGGGCCTGTACCATGGAAGCAAGCACCCAATCTGTTCAGTTCAGTTTCTTCATCTGAGCTGCGTCCAGATGTCTCCCCTCTAGTTGGATTATCAAATGGCATTGATAAAATTTATGGCAATGAGAGGTTACTCGCCTCTTCCTTGGAGAAAAAAAGTGAGGATTTGTCTGGAATATCAGTTAATTGGAGCACGAATTTTGGTCCACGGGAAATGATGCTTATGAATGGAGTGAGGAATGAAGACAAATCAAGTTCCTGTTTAAATATGTGTCAGCAGCCTCCTTCTCTGAAGGAAGATATGTCCCCAGCATCATTTGCTCTGTCTGTACCTTATGCGACTCCAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATTCACAACAAACTACACCTCTTCCAGGAAAGCAATTTAGTGACACTATGCATTTATCCATGGACTCCTCGGGTGAAGCCCAGGTTCGCAATGGACGACCTCGAGCAGATGTCCGAGGAAGAAACCAGTTGCTGCCACGATATTGGCCCAGGTGTACTGATCAAGAGCTACAGCAAATAACCATAGATTCTACTTCTGTAATTACTCCCTTATTTCAAAAGACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGCCTAGTGCTTCCAAAAAAGTGTGCTGAGGCCTACTTCCCACCAATTTCCCATCCTGAAGGGTTGCCACTTAAAATCCTTGATGCTAAAGGAAAAGAATGGATATTTCAGTTTCGTTTCTGGCCCAACAATAACAGCAGAATGTACGTGTTAGAGGGTGTCACTCCCTGCATACAGTCCATGCAGTTGCAAGCAGGTGATACAGTAACATTTAGCCGGCTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTACGCCCTCCGACCAGGACAATGAAACAAACAAGACTGGAATTGAATTTTCTGCACAGGGTGAGGTCGAACTGGCTGATCCTAGTTCATGGTCTAAGATTGATAAGTCAGGATACATCGCGAAAGAAGTACTGGGTAGCAAATCTTCAATCAGAAAGAGGAAAAGCAACATCTTGGGTTCAAAGAATAAACGCCTGAGGATCGAAAATGAGGATCTAATAGAGCTGAAAATTACATGGCAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAGCCATGTTGCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTACTCGGGAAGCCAACAATTTTCACCACTGATAATATGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCTCAAGTGGCGTAAATTGCCAGCAAATGCGCTTCTTCCATCAAAATGGATGTGTTCCAATAATTCTTGGGACCCAGAAAGATCTTCTTGCTCAGCTGCACAAGAAATGACAGCAGAACAGCTTGAGAATTTGCTACCCACCTGTAATTCAGCTGTATCCAAGAAAATGAAGGCAGCCAAACGGGATCCCGATAATGCTGAAGCTTTGGAGGGACTCGACACACTTGCAAATCTAGCCATCTTGGGGGAGTGTGAGGCACTTCCAGCATCTTCCCAGGCCACAACTAAACACCCACGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAACCTCCAAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCATATGTAATGTATGCTTAACAGTGAAGCGTCGTTTCCATACCCTAATGTTACGCCGTGAGAAGAAACAATCAGACAGAGAAGCAGAGACAACACGTAAAAAACAGCAGCAACAGCATCCTCAGCCGTTACCTTCATCCGAAACTTTGCTTGATGATGATTCCTTGCCTTTTAGTAACACAGGGGATAGCAGCAGCCCAAACCAGAACAAAGAGGGCAATGACGGTTCTGATGATGATCCTATCCAGATAATATCATCTACTTCGCCATTCAAAGGCCAAATTGATTTAAACATCCAGCCAGAGCGAGAAGAAGGCTTTTCGCCTCATTCAGATTCTGGTGGTATGAAGTATCTCCATGATGCCACTGATATGCATCTCAAGCAGCAGACTATATTGAACTCTAGTACCGGAGACGCATCAGGAAGTCAGTCACAGCAGGTTGGAGATGAAAAACTTAGAAATGGTGTATCCCATGGCAGTAGTAGTCATAACAATGCTGATAAGGAACATGCCCAAGCTTTGCCTATGAATGTGTGA 2631 0.4447 MTSITSSNLLCFNPECKEFKSDRPKKGWRLRTGDLAELCDRCGSAFEEGRFCDIFHSNASGWRNCETCRKGIHCGCIVSSHAFVLLDPGGIECFACARKHILLPSNPTWPPSFSLQNRLSERLRDMSAKSWSQLAGSGPVPWKQAPNLFSSVSSSELRPDVSPLVGLSNGIDKIYGNERLLASSLEKKSEDLSGISVNWSTNFGPREMMLMNGVRNEDKSSSCLNMCQQPPSLKEDMSPASFALSVPYATPNERNGQIGVTGSHSQQTTPLPGKQFSDTMHLSMDSSGEAQVRNGRPRADVRGRNQLLPRYWPRCTDQELQQITIDSTSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISHPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATPSDQDNETNKTGIEFSAQGEVELADPSSWSKIDKSGYIAKEVLGSKSSIRKRKSNILGSKNKRLRIENEDLIELKITWQEAQGLLRPPPSHVASIVVIEGFEFEEYEDAPVLGKPTIFTTDNMGEKIQWAQCEDCLKWRKLPANALLPSKWMCSNNSWDPERSSCSAAQEMTAEQLENLLPTCNSAVSKKMKAAKRDPDNAEALEGLDTLANLAILGECEALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCICNVCLTVKRRFHTLMLRREKKQSDREAETTRKKQQQQHPQPLPSSETLLDDDSLPFSNTGDSSSPNQNKEGNDGSDDDPIQIISSTSPFKGQIDLNIQPEREEGFSPHSDSGGMKYLHDATDMHLKQQTILNSSTGDASGSQSQQVGDEKLRNGVSHGSSSHNNADKEHAQALPMNV* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0114 876 MobiDBLite consensus disorder prediction 825 876 - -
Lan16g0114 876 MobiDBLite consensus disorder prediction 825 866 - -
Lan16g0114 876 Gene3D - 566 619 - -
Lan16g0114 876 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 6 811 - -
Lan16g0114 876 MobiDBLite consensus disorder prediction 777 791 - -
Lan16g0114 876 MobiDBLite consensus disorder prediction 733 769 - -
Lan16g0114 876 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 6 811 - -
Lan16g0114 876 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677
Lan16g0114 876 MobiDBLite consensus disorder prediction 436 454 - -
Lan16g0114 876 MobiDBLite consensus disorder prediction 716 732 - -
Lan16g0114 876 SUPERFAMILY DNA-binding pseudobarrel domain 332 435 IPR015300 -
Lan16g0114 876 Gene3D - 313 439 IPR015300 -
Lan16g0114 876 MobiDBLite consensus disorder prediction 715 791 - -
Lan16g0114 876 SMART B3_2 335 436 IPR003340 GO:0003677
Lan16g0114 876 MobiDBLite consensus disorder prediction 253 290 - -
Lan16g0114 876 MobiDBLite consensus disorder prediction 253 300 - -
Lan16g0114 876 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677
Lan16g0114 876 CDD B3_DNA 333 434 IPR003340 GO:0003677
Lan16g0114 876 MobiDBLite consensus disorder prediction 435 456 - -
Lan16g0114 876 ProSiteProfiles Zinc finger CW-type profile. 562 612 IPR011124 GO:0008270
Lan16g0114 876 Pfam CW-type Zinc Finger 567 609 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0114 Lan-Chr16 888586 896839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0114 1 735 B3 DNA Binding Superfamily AT2G30470 42.222 1.44e-172 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan16g0114 B3 1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0114 - - gmx:100782114 1468.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0710 4 9464572 9474000 Lan16g0114 16 888586 896839 LSH
Lan19g0972 19 17131050 17139101 Lan16g0114 16 888586 896839 LSH