Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0110 ATGGAAAGGACCTCGCCGGAACCATCTACTGCCGGAAATTCCAATCTCCGGCGAGCCATTCACTTCATTTCCTCCCTCATTTCCATTTCTCATTCCATCAGAGTCTTCGCCGGAAAATGGAAACTCATTCGTACCAACCTCGAAGAGCTTCATTCTGCACTAATCGCCTCTGATAATCCTGATTCCGGTGAGAATCCCTCACTTTCCGGCATACTCCGTTCGTTACTAAACACCGCCGGCGAGTGCCATGACCTCGCTCGCCGCTGCTCCGACGTGTCGTACAGTGGGAAGTTACTGATGCAGAGTGATTTGGATGTAACGTTGGTGAAGCTCAACCACCATGTGAAGAAGCTCGATGAGATGTACAATACGGGTATTTTGATACGTAGCCACGCTCTTATTGTATCAAAACCTTGTCTTGGTGCTTCAAAAGAGGATATGAGGTTTTACATAAGGGACCTTTTGACAAGGATGAAAATCGGTGATGTGGGTATGAAGAAAATGGCTTTGATTAATCTTCATGAGGTTGTTGTTGAAGATGATAGGTATTTGAAGGTTATTGTGGAAGTTGGTGATGTTGTTCATTTGTTGGTTGAATTTCTTGGTTCTTCTGAGGTTGTGATTCAAGAAGAATCTGTAAAGGTTGTTGCTTTGATTACTGGGTTTGGTGATTCTTCATATAAAGGGGTTTTGATTGGTGCTGGGGTTGTTGGTAATTTGATTAAGGTTTTAGAACGTGGGAGTGAGGTTGGGAAAGTTGGTGCTGCTAGGTGTTTGATGAAATTGACTGAAAATTCGGATAATGCTTGGTTGGTTTCAGCTCATGGGGGTGTGAATGTTTTGTTGAAGATTTGTGGTAATGTTGATTCAAAAGGTGATTTGGTTGGTCTTGCTTGTGGGGTTTTGAGGAATCTTGTTGGTGTTGAAGAGATCAAGAGGTTTATGGTTGAAGAAGGCGCGGTTTCGACCTTTATCGGGCTTGTTAGATCCGAGGATGAAGCAATTCAGGTTAGTTCCATTGAGTTCATTCAAAATATTGCCTTTAAAGATGAATTGGTTAGGCAAATGGTTGTTAGAGAGGGCGGTGTTCGTGTTTTGTTCCTTGTTTTGGATCCTGAATTCTCTTATTCATCTAAAACTAAGGAGGTAGTAATGAGGGCTATAGAAAACTTGTGTTTTTCTTCATCTAATTGTGTAAGTACTTTGATAAGTTATGGATTTGTAGATCAATTATTGTACTACATTCGAAACTACGAGGTTTCGATTCAAGAGTTGGCATTGAAAGTAACATTTAGATTGTGTGGAACATCAGAGGAGGCTAAGAAAGCACTAGGTGATGCTGGCTTCATGCCAGAGCTTGTTAAGTTTCTAAATGCCAAATCATTCGAGGTTCGCGAAATGGCCGCTGAGGCACTTTCCGGCATGGTCATGGTGCCTAAAAATCGAAAGAAGTTTGTGCAAGATGATCAAAACATTGCCCTTATTCTTCAGTCGATCGACCCCGGAAAGGGAAATTCCGGTATCAAAAAGTTCTTAATCTCTATCTTAATATCATTAACAAATTGCAATACTGGGAGGAAAAAGATTATGAGTTCTAGTTATGCCAAGAATATAGAAAGGCTTTCAGAGAATGAAGTTTGTTCTGATGCCAAGAAACTTGTAAGGAAACTAACCACAAACCGTTTTCGCAGTATGTTGAATGGAATATGGCACTCTTAA 1719 0.4107 MERTSPEPSTAGNSNLRRAIHFISSLISISHSIRVFAGKWKLIRTNLEELHSALIASDNPDSGENPSLSGILRSLLNTAGECHDLARRCSDVSYSGKLLMQSDLDVTLVKLNHHVKKLDEMYNTGILIRSHALIVSKPCLGASKEDMRFYIRDLLTRMKIGDVGMKKMALINLHEVVVEDDRYLKVIVEVGDVVHLLVEFLGSSEVVIQEESVKVVALITGFGDSSYKGVLIGAGVVGNLIKVLERGSEVGKVGAARCLMKLTENSDNAWLVSAHGGVNVLLKICGNVDSKGDLVGLACGVLRNLVGVEEIKRFMVEEGAVSTFIGLVRSEDEAIQVSSIEFIQNIAFKDELVRQMVVREGGVRVLFLVLDPEFSYSSKTKEVVMRAIENLCFSSSNCVSTLISYGFVDQLLYYIRNYEVSIQELALKVTFRLCGTSEEAKKALGDAGFMPELVKFLNAKSFEVREMAAEALSGMVMVPKNRKKFVQDDQNIALILQSIDPGKGNSGIKKFLISILISLTNCNTGRKKIMSSSYAKNIERLSENEVCSDAKKLVRKLTTNRFRSMLNGIWHS* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0110 572 Pfam Armadillo/beta-catenin-like repeat 438 473 IPR000225 GO:0005515
Lan16g0110 572 SMART arm_5 350 393 IPR000225 GO:0005515
Lan16g0110 572 SMART arm_5 308 348 IPR000225 GO:0005515
Lan16g0110 572 SMART arm_5 265 307 IPR000225 GO:0005515
Lan16g0110 572 SMART arm_5 437 477 IPR000225 GO:0005515
Lan16g0110 572 SMART arm_5 180 221 IPR000225 GO:0005515
Lan16g0110 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 276 320 IPR000225 GO:0005515
Lan16g0110 572 SUPERFAMILY ARM repeat 152 556 IPR016024 -
Lan16g0110 572 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 572 - -
Lan16g0110 572 Gene3D - 150 561 IPR011989 -
Lan16g0110 572 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0110 Lan-Chr16 857661 859796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0110 - - gmx:100809382 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0977 19 17183790 17185968 Lan16g0110 16 857661 859796 LSH
Lan18g0593 18 10896210 10898486 Lan16g0110 16 857661 859796 PCT
Lan16g0110 16 857661 859796 Lan18g0593 18 10896210 10898486 PCT