Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0085 ATGGAGAACTATTCATACCCTGATTCCGGCGACTCCTCTCCCCGTTCCCGCGAAATCGACTTCGACAATCCGCCACCGTGGGACGACCAACAACAACCGCCGATTAACTATAAACCCAAATTCATGTGCAGCTACGGCGGTAAGATCCAGCCCCGCTCCCACGACAACCACCTCTCCTACGTCGCCGGCGACACCAAAATCCTTGCCGTCGACCGCCACATCAAGTTTTCCACCTTCCTTTCTAAGCTCTCATCTCTCTCTTCCTTCCCCTCCGATGAACTCACGTTCAAGTATCAACTTCCCGGAGAAGAATTAGACGCTCTTATATCTGTAACTAACGATGATGATCTCGATCATTTGATGAACGAATACGATCGTCTCTACCGTACTTCTTCTACACCTTCCCGCATGCGATTATTCCTCTTTCATAATATCACTTCCCAACCTCAACAACGCTTCATCCAAACTATTGAATCCGGTTCGATTCCGGTTCCGGTTCAGGTTCAGGTTCCGGTTCAACCCGATCCGATGAAGCCTTCAACCAACGTTGATTTCCTATTTGGTTTAGAAAACAAGGGAGTTGCTGTTGCTCCGCCTCAGCCACCGCCTGTGGTGGAGAAGTTTCTTGATCCGGTAGCGGAGCCTGTGGCGGCGTTGCCGGAGTATCAACAGAGAGGTGCTGTTGTAGGTTCGGATCCGAATTTGAACCATCCGTTTGAGGTTCAGAGGCAGTTACAGCAAGAACTTCAGAGGATGAGAATTGCGGAGAATGATCAAGCTGCGTATCGGAGAAAAAGTAGCGAAGACAATCGCAATCTCGTCGGGAATTATCCTTCCGGCGAGTATTACGTTCAGAAGCAGCCTGAGAAATTCCCGGTGTCTAATTTCCAGGCGAATGCGCCGAATCAGGCAGGTTACTGGCCGGAAAAGCATGGTTCCGGCGAGTTTTATCCACCGGCGATGTCTAACGCTTCCGGAGGAGGAGAACAACCAGTTTACATGATTCCGGCGCCGGGAACGTTCTATCATGCACCGATGATGCGTCCACCGTCGGCGCCTCAGGTTACTCAAGGATACTACACAGTGCAGCGAATGGGTTCTGATGGTTACCGTGATGCGCCGGTATACGGTAGCGTACAACCTCCTAAAGCAGCGTTTTCAACTGCTTCTCCGTCGAACTTGGCACCGGCACAGCCGGTTAAAGGTCCATCGTATACGGAAGGATACGGTGTTGTAAGACCAGGTGGGATATCAGATAATACGGGCGCATATGCACAGATGGCGTATGATAGTGTGAGTGGGAGACAAGTTTATTATAATGCGCCGGGTGGTGTAGTGCAGGCTCCGCCGTACCAAGGAATGGCTCCACCTGCCACCACAGATAGGGTGACGGTGGGCCAGGATGGTAAACTCATAAACAAGCTTTCACAAGGTTCAGTGTGA 1443 0.51 MENYSYPDSGDSSPRSREIDFDNPPPWDDQQQPPINYKPKFMCSYGGKIQPRSHDNHLSYVAGDTKILAVDRHIKFSTFLSKLSSLSSFPSDELTFKYQLPGEELDALISVTNDDDLDHLMNEYDRLYRTSSTPSRMRLFLFHNITSQPQQRFIQTIESGSIPVPVQVQVPVQPDPMKPSTNVDFLFGLENKGVAVAPPQPPPVVEKFLDPVAEPVAALPEYQQRGAVVGSDPNLNHPFEVQRQLQQELQRMRIAENDQAAYRRKSSEDNRNLVGNYPSGEYYVQKQPEKFPVSNFQANAPNQAGYWPEKHGSGEFYPPAMSNASGGGEQPVYMIPAPGTFYHAPMMRPPSAPQVTQGYYTVQRMGSDGYRDAPVYGSVQPPKAAFSTASPSNLAPAQPVKGPSYTEGYGVVRPGGISDNTGAYAQMAYDSVSGRQVYYNAPGGVVQAPPYQGMAPPATTDRVTVGQDGKLINKLSQGSV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0085 480 Pfam PB1 domain 56 143 IPR000270 GO:0005515
Lan16g0085 480 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 476 - -
Lan16g0085 480 SUPERFAMILY CAD & PB1 domains 54 145 - -
Lan16g0085 480 Gene3D - 59 144 - -
Lan16g0085 480 PANTHER OS05G0427100 PROTEIN-RELATED 1 476 - -
Lan16g0085 480 Coils Coil 245 265 - -
Lan16g0085 480 CDD PB1_UP2 42 142 - -
Lan16g0085 480 MobiDBLite consensus disorder prediction 1 34 - -
Lan16g0085 480 SMART PB1_new 53 144 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0085 Lan-Chr16 701639 703345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0085 38 153 MAP Kinase Kinase Kinase AT3G46920 41.026 1.07e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0085 - - adu:107480527 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0616 18 11225475 11227047 Lan16g0085 16 701639 703345 PCT
Lan16g0085 16 701639 703345 Lan18g0616 18 11225475 11227047 PCT