Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0063 ATGGTTTTGCATCACAGAAAGTTGATACCACAAATCTGTGAACTGATCTGTCATACTGAGCAAGAACCATGTTTATCAGATTGCAAAGTTTGCATCAAGGTATGTTTAACCAATCCATATTCTTATTATTATTCTCAACCACCACCAACAACAACAACACCTTTATTCTTAGATCAACATGAAGTGAAACACCATAAAATCTCCACTTATTTGATCCTATCTCTTTCTATTCTCCTTGCTGCTTTATTTGTTGTTTGCTCCCATGCAATATATACCAAGTTTTTCTCAAGAAGAAGTAGAAGGGTATCTATATTATCAAGGCTGCAACAAACACAAGAGCACCACCATGATGATTTTCTTGATCAGGAACATGGTCCTATGGTGGATCATCCTATATGGTATATCCGTACTAATGGTCTTCATGAATCAATTATCAGTGCAATCACAGTTTGTAAGTATAAGAAAGGAGAGGGTTTGATTGAAGGAACTGAATGTTCTGTTTGTTTGAGTGAGTTTCAAGAAGATGAAAGTTTAAGACTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTGCATCTCATACCAATTGTCCTATGTGTAGAGCTCCAATTGTTACCAACCCTACAAGGGTTCCTTCTCTTGTGCCTAATAGTGTTGTTGTTGATCCAAGTTCATTGGAAAATAGTGCGCGCGATACTCGTGAAGGACACGAACTTAGTAATAGTGCAGAAGAAGAAGGAGGAGGAGAATTGGATGTTGAAGATGAGACAAGGGTATGTGATACTGAAAGTGTGGTGGTGGATATAAGACCAAGAAGATCTGTTTCTTTGGATTCATCTTCTGTTGCAAGTATCAATCTTGCTCTTGCAAATGTTCAATCATCGGCTCGGAGTGGTGAAAACGAAGGGATTGTTTCGAAGAGGTTTATTGGAAATGAGAATTTTCCAACTACTTCCAATTCCAAAAGAAGCTCATCTTTTAGGACAAGATATCTGCATAATGTGCTGCATAGTTCAATGAAGAGGTCACATTCCTTTAATGGTAAATACCTTGTGTCGTGGTATAGCCGCAATCAGAGGAAGCGAAATGCTTCTCTCGGAAGCTTTTGA 1128 0.3794 MVLHHRKLIPQICELICHTEQEPCLSDCKVCIKVCLTNPYSYYYSQPPPTTTTPLFLDQHEVKHHKISTYLILSLSILLAALFVVCSHAIYTKFFSRRSRRVSILSRLQQTQEHHHDDFLDQEHGPMVDHPIWYIRTNGLHESIISAITVCKYKKGEGLIEGTECSVCLSEFQEDESLRLLPKCHHAFHLPCIDTWLASHTNCPMCRAPIVTNPTRVPSLVPNSVVVDPSSLENSARDTREGHELSNSAEEEGGGELDVEDETRVCDTESVVVDIRPRRSVSLDSSSVASINLALANVQSSARSGENEGIVSKRFIGNENFPTTSNSKRSSSFRTRYLHNVLHSSMKRSHSFNGKYLVSWYSRNQRKRNASLGSF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0063 375 CDD mRING-H2-C3H2C2D_ZSWM2 164 207 - -
Lan16g0063 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 366 - -
Lan16g0063 375 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Lan16g0063 375 SUPERFAMILY RING/U-box 159 215 - -
Lan16g0063 375 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 366 IPR044675 -
Lan16g0063 375 MobiDBLite consensus disorder prediction 234 250 - -
Lan16g0063 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 214 IPR013083 -
Lan16g0063 375 MobiDBLite consensus disorder prediction 228 261 - -
Lan16g0063 375 Pfam Ring finger domain 164 207 IPR001841 -
Lan16g0063 375 SMART ring_2 165 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0063 Lan-Chr16 368095 369729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0063 75 252 C3H Transcription Factor Family AT1G72220 48.108 5.47e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0063 - - gmx:100804758 365.925