Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0057 ATGGCGGAAGGTGTTTCTTATGGATTAGGTCCTCGATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTGCGGCCTTCAGAAATTTGTGAAATTCTCCGTAATTATCGGATGTTTCACATCACACCAGAACCTCATAACAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGTAAGATTTTGAGATACTTTAGGAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCCCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGGTAATGAAAATTTCCAAAGGCGAAGCTACTGGATGCTTGAACCAGATATGATGCACATAGTTTTTGTTCACTACTTGGAAGTTAAGGGTAACAAGACAACTATTGGAGGAATTACAGAAAGTGACGACGTTACATCAGATTCCCAAAAGGCCACCTCTCCATCATCTGGCTTTCCATCAAATTATAGTACTGGACCTTCACTGAGTACAGATTCAATGAGCCCAACTAGCAGCCTGGCATCTTTACGTGAAGATGCTGATTCTGAGGATATTCACCAAGCAAGTTCTGGATTACACACGTTACGTGAGTCACAACATATGGGGAGTGTTCTTCCGATGGACAAGCATGGTGCTGGTTTGAACAGTAATTATCTTCTTCATCCCATTTCAGGTGATCATGGGCAGTCATCACCTTCTGGAACAGATTATATCCCACTTCTTCCAGGGGATAAATTTGGAGGAAATGATAGTACCTACATTGATGGCCAGAAAGTACATGGCATGGCATCCTGGGACAATGTCTTGGAGCAATGCACTATGGAATTGCATACTGATCCTTCTGTTATATCATTTCCTTCCATCCCATCTAGTTTGGTGGGAAACATTCTTGAACAAGAACATACCATTTTTGGTGACCTTTTAGTGGGTAGAAGTGGCTTCACGGAGGAGGCAAGGAGCTCACAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATTCAGGACACTTTCCATCCTTAACCCAACCACTGAGTTTGGATTTGGGATCAGAATATAGCACTGGCTTACTAGGGAATGAAACTCATAATATAAGTTCTGATATTGCTCCCAACCTGTTTAATTTTCATGGTAAGCCAAAAGAGCAGCCTGTGCAGCAATACTATCCAGAGCATAATTCAGACGGAGAACCTCAACTAGAACTAAAATCCAATTATGCGAGTGAAGTTCCTGGTGAAGAAAGCGTCAACTATGCCGTAAGCGCGAAGCGCACATTTTTGGATATAGACAAAAGCCTGAAGAAGGTTGATAGCTTCTCTCAGTGGGTTAATAAAGAACTTGGAGATGTTGATGATTTGAATATGCAGTCCTCACCCGGTATTTCATGGAGCACAGATGAAAGTGGGCATGTGATAGATGATGCCTCATTGAGCCCATCCCTCTCCCAGGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCATATGCTGAATCAGAAGCTGAGGTGTTGATTATTGGAGCATTTTTGAAGAGCCAACCTGAGGGGACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCTTAAGATTGGACGGGTCCCCTTCTATGTAACATGTTCGAATAGGTTAGCTTGTAGTGAGGTGCGGGAGTTTGATTACAGAGTTGGCTTTTCTGGAAATGTAGATTTTGCAGATATCTATGGTAGTTCATTTGAAATGCCACTTCATCTGCAACTGGAGGAGTTGCTTTCTTTAAAACCAGTGCACCCTTCAAATCTAACTTTTGAGGGTTATTCAGAGCAAAGAAACATAATTTTTAAGCTTATTTCGCAGAGGGAGGAAGAGGAGTATTCAAGTAGGGAAGAGTGCACTGTGAAGAAGGATATATCACAAGAAAAGGTTAAGGAGCATCTTCACAGGCAGGTTAAAGAGAAGCTGTATTCATGGCTTCTTTGCATAGTAACTGATAGTGGTAAAGGGCCAAATATCTTAGATAAAAACGGGCAGGGGGTGTTACATTTAGCTGCTGCTCTCGGTTATGATTGGGGCATAAAACCAATTTTAATTGCTGGAGTTAATATCAATTTCCGTGATGTGAATGGTTGGACGGCTCTACATTGGGCTGCATTCTGTGGCAGAGAGCGGACAGTTGCTCTCCTTGTCTCCACAGGCGTGGATTCTGGAGCATTGACGGATCCATCTCCAGCATTTCCTTCAGGTAGAACACCTGCAGATCTTGCATCTAGCAATGGGCACAAAGGAATTTCTGGTTTTCTTGCCGAGACTTTACTAACCAGTCACCTCAAAACTCTCACAATGGATGAACAACACAAAGGTGGTGGGCAACAAATTTCAGGATTGAGCTCAGTGCAGACAGTTTCCGAACGAACTGTAACACCTGTGTTCTACGGTGATATGCCAGATGCCCTCAGTCTCAAGGATTCTCTTACTGCTGTCCGCAATGCTATACAAGCTGCTGACCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAATTAAATCAGTATGAAGATGATGATGATGATGGGTTTGGGTTGGCAGAGCAGCAAGCTATTTCCCTTGTAGCTTCTAAGTCATGCAAATCCGGACAAGGAGATGGTTTAGCTAATACTGCTGCGGTACAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGACAAGAGTTCTTGTTCATTCGTCAGAGAATTGTTAAAATCCAGGCCCATGTTAGAGGTCACCAGGTAAGAAAGAAGTTTAAAACAATAATCTGGTCTGTGGGAATACTGGAAAAGGTTATATTACGCTGGAGACGCAAGGGCAGTGGTTTACGTGGATTTCGACAAGATGCCCTTCCTAAGGCTCCCAGCCAACAAAGTGATTCTGTGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGGAGAAGTTTCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGAGCTCAATACAGGCGACTGCTAAATGTTGTTGAGGATTTCCGTCAAACCAAGCAGACATGCAATATGGAGTTGGTCAATACTGAAGAGACTGTTGATGGAGTGGAGGACTTGATTGATATTGATATGCTATTAGATGATGACAATTTCATTCCTTTAGCATTTGATTGA 3276 0.4249 MAEGVSYGLGPRLDIQQLQFEAQHRWLRPSEICEILRNYRMFHITPEPHNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEGNENFQRRSYWMLEPDMMHIVFVHYLEVKGNKTTIGGITESDDVTSDSQKATSPSSGFPSNYSTGPSLSTDSMSPTSSLASLREDADSEDIHQASSGLHTLRESQHMGSVLPMDKHGAGLNSNYLLHPISGDHGQSSPSGTDYIPLLPGDKFGGNDSTYIDGQKVHGMASWDNVLEQCTMELHTDPSVISFPSIPSSLVGNILEQEHTIFGDLLVGRSGFTEEARSSQSLQSNWQIPFEDNSGHFPSLTQPLSLDLGSEYSTGLLGNETHNISSDIAPNLFNFHGKPKEQPVQQYYPEHNSDGEPQLELKSNYASEVPGEESVNYAVSAKRTFLDIDKSLKKVDSFSQWVNKELGDVDDLNMQSSPGISWSTDESGHVIDDASLSPSLSQDQLFSINDFSPKWAYAESEAEVLIIGAFLKSQPEGTTCNWSCMFGEVEVPAEVLANGILCCQAPPLKIGRVPFYVTCSNRLACSEVREFDYRVGFSGNVDFADIYGSSFEMPLHLQLEELLSLKPVHPSNLTFEGYSEQRNIIFKLISQREEEEYSSREECTVKKDISQEKVKEHLHRQVKEKLYSWLLCIVTDSGKGPNILDKNGQGVLHLAAALGYDWGIKPILIAGVNINFRDVNGWTALHWAAFCGRERTVALLVSTGVDSGALTDPSPAFPSGRTPADLASSNGHKGISGFLAETLLTSHLKTLTMDEQHKGGGQQISGLSSVQTVSERTVTPVFYGDMPDALSLKDSLTAVRNAIQAADRIHQVFRMQSFQRKQLNQYEDDDDDGFGLAEQQAISLVASKSCKSGQGDGLANTAAVQIQKKFRGWKKRQEFLFIRQRIVKIQAHVRGHQVRKKFKTIIWSVGILEKVILRWRRKGSGLRGFRQDALPKAPSQQSDSVKEDDYDFLKEGRKQSEEKFQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKQTCNMELVNTEETVDGVEDLIDIDMLLDDDNFIPLAFD* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0057 1091 Gene3D Immunoglobulins 496 591 IPR013783 -
Lan16g0057 1091 ProSiteProfiles Ankyrin repeat profile. 735 767 IPR002110 GO:0005515
Lan16g0057 1091 Pfam IQ calmodulin-binding motif 917 934 IPR000048 GO:0005515
Lan16g0057 1091 Pfam IQ calmodulin-binding motif 939 958 IPR000048 GO:0005515
Lan16g0057 1091 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lan16g0057 1091 SUPERFAMILY Ankyrin repeat 686 797 IPR036770 -
Lan16g0057 1091 ProSiteProfiles IQ motif profile. 937 961 IPR000048 GO:0005515
Lan16g0057 1091 Pfam Ankyrin repeats (3 copies) 707 794 IPR002110 GO:0005515
Lan16g0057 1091 Pfam IPT/TIG domain 503 581 IPR002909 -
Lan16g0057 1091 MobiDBLite consensus disorder prediction 146 198 - -
Lan16g0057 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1091 - -
Lan16g0057 1091 SUPERFAMILY E set domains 503 589 IPR014756 -
Lan16g0057 1091 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Lan16g0057 1091 SMART ANK_2a 774 803 IPR002110 GO:0005515
Lan16g0057 1091 SMART ANK_2a 702 731 IPR002110 GO:0005515
Lan16g0057 1091 SMART ANK_2a 735 764 IPR002110 GO:0005515
Lan16g0057 1091 ProSiteProfiles Ankyrin repeat region circular profile. 735 761 - -
Lan16g0057 1091 MobiDBLite consensus disorder prediction 146 189 - -
Lan16g0057 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1091 - -
Lan16g0057 1091 Gene3D - 914 961 - -
Lan16g0057 1091 SMART CG_1_2 18 136 IPR005559 GO:0003677
Lan16g0057 1091 SMART iq_5 936 958 IPR000048 GO:0005515
Lan16g0057 1091 SMART iq_5 913 935 IPR000048 GO:0005515
Lan16g0057 1091 ProSiteProfiles IQ motif profile. 914 943 IPR000048 GO:0005515
Lan16g0057 1091 ProSiteProfiles Ankyrin repeat profile. 702 734 IPR002110 GO:0005515
Lan16g0057 1091 Gene3D - 658 807 IPR036770 -
Lan16g0057 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 964 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0057 Lan-Chr16 320988 329462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0057 1 1072 CAMTA Transcription Factor Family AT5G64220 51.989 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lan16g0057 CG-1 4.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0057 K21596 - gmx:100818124 1647.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0748 4 9665565 9674715 Lan16g0057 16 320988 329462 LSH
Lan19g1039 19 17621810 17631982 Lan16g0057 16 320988 329462 LSH