Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0047 ATGGGAGATAACAATAACAATACCAATAATATTCTTCCACCAGGGTTTAGATTTTATCCAACAGATGAAGAACTTGTTGTCCATTTTCTTCATAGAAAGGCTTCACTTCTACCTTGCCACCCTCATGTTATCCCTGATCTTCATCTCTCTCAATATGATCCATGGGAACTTCATGGTACAGCTTTGGCAGAGGGAAATCAATGGTACTACTATAGCAGAAGGACACAAAATAGGGTCACTGAAAATGGGTATTGGAAAGCAACAGGAATAGAAGAAGCAGTGGTTACAAGATCAAGTAACAAAAGGGTTGGCATGAAGAAATATTTTGTGTTCTATGTTGGAGAATCCATTGCTGATGGAATCAAAACCAATTGGATAATGCAAGAGTATAGTCTTTTAGATTCTGCTTCCTCTACCTCCAAAACAAAATCACATCAAAAAACAGATTACAGTAAATGGGTGATTTGTAGAGTTTATGAGCACAACGAAGATGAAGATGAAGATGAAGATGAAGATGGAACAGAACTTTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAAGAAATTAGCTTACCAAATTAG 591 0.3655 MGDNNNNTNNILPPGFRFYPTDEELVVHFLHRKASLLPCHPHVIPDLHLSQYDPWELHGTALAEGNQWYYYSRRTQNRVTENGYWKATGIEEAVVTRSSNKRVGMKKYFVFYVGESIADGIKTNWIMQEYSLLDSASSTSKTKSHQKTDYSKWVICRVYEHNEDEDEDEDEDGTELSCLDEVFLSLDDLEEISLPN* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0047 196 ProSiteProfiles NAC domain profile. 12 161 IPR003441 GO:0003677|GO:0006355
Lan16g0047 196 Pfam No apical meristem (NAM) protein 13 132 IPR003441 GO:0003677|GO:0006355
Lan16g0047 196 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 10 193 - -
Lan16g0047 196 PANTHER NAC TRANSCRIPTION FACTOR 56 10 193 - -
Lan16g0047 196 Gene3D NAC domain 21 166 IPR036093 GO:0003677|GO:0006355
Lan16g0047 196 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0047 Lan-Chr16 235067 236131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0047 8 184 NAC Transcription Factor Family AT1G69490 38.919 7.47e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan16g0047 NAM 7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0047 - - gmx:100170712 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0755 4 9703291 9705213 Lan16g0047 16 235067 236131 LSH