Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0044 ATGTCTGAAGCGGATGAGTTTCGTTGCTTCATTGGTGGCCTTTCATGGTCAACTTCTGATAGAAAATTAAAGGATACATTTGAAAAGTATGGCAGGCTTGTTGAGGCAAAGGTGGTAGTTGACAAATTCTCCGGGCGGTCTCGCGGTTTCGGGTTTGTCACATTTGATGACAAGAAAGCTATGGAGGAGGCTATAGATGCTATGAATGGAGTGGATTTAGATGGTCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAAGAGATGATGGTGATCGCCACCGAGAACGTGGCCGCGATCGGGGTCGTGATCGTGATTATGGAGGTGGCCGGGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCAAGTGAAGGTGAAAGAGGGGGGAGATATGGTGAGAGGGAAAGTAGATATGGTGACAGGGAAAGTAGATATGGTGGCAGGAGTGGTGGTCCTGATAGGAATGCAGATCGTTCTTCTGGTCGGCGCCACAGGGATGCTGATAGTCATGGAGATTCTGGAAATGATCGATATGACCGTGACCGGGCTGGACCTTATGAGCGTCGGGGATCTGGAGGCCATCGTTGA 624 0.4856 MSEADEFRCFIGGLSWSTSDRKLKDTFEKYGRLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEEAIDAMNGVDLDGRTITVDRAQPQQGSRDDGDRHRERGRDRGRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGERGGRYGERESRYGDRESRYGGRSGGPDRNADRSSGRRHRDADSHGDSGNDRYDRDRAGPYERRGSGGHR* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0044 207 Gene3D - 116 178 - -
Lan16g0044 207 MobiDBLite consensus disorder prediction 167 207 - -
Lan16g0044 207 MobiDBLite consensus disorder prediction 87 112 - -
Lan16g0044 207 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lan16g0044 207 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Lan16g0044 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Lan16g0044 207 Gene3D - 2 115 IPR012677 -
Lan16g0044 207 MobiDBLite consensus disorder prediction 125 160 - -
Lan16g0044 207 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Lan16g0044 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lan16g0044 207 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 162 - -
Lan16g0044 207 SUPERFAMILY Retrovirus zinc finger-like domains 112 138 IPR036875 GO:0003676|GO:0008270
Lan16g0044 207 ProSiteProfiles Zinc finger CCHC-type profile. 120 135 IPR001878 GO:0003676|GO:0008270
Lan16g0044 207 Pfam Zinc knuckle 119 135 IPR001878 GO:0003676|GO:0008270
Lan16g0044 207 PANTHER TRANSFORMER-2-RELATED 1 162 - -
Lan16g0044 207 MobiDBLite consensus disorder prediction 76 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0044 Lan-Chr16 214507 218793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0044 10 89 Eukaryotic Initiation Factors Gene Family AT1G71770 34.483 3.59e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0044 - - lang:109329957 363.229