Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0039 ATGTCATTCCGTAGCATAGTTCGTGATGTGAGGGATAGTTTCGGGAGTTTATCTAGGCGAAGTTTTGATGTCAGACTGACCGGCCATCATAGAGGAAAGTCTCATGGGTCGGTACAAGATTTGCATCACCAGTCTCTAGTAATTCAAAGTAGCCGATGGGCAAGCTTACCCCCTGAATTATTGTATGATGTCATTAGACGACTTGAGGAAAGTGAGAATACATGGCCATCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGAAATTGTTAAAAGCCCTGAGATCTGTGGAAAACTTACATTCCCTGTGTCCCTGAAGCAGCCCGGGCCACGAGATGGAATGATTCAATGTTTTATCAAAAGAGATAAATCAAATTTGACATACCATCTGTTCCTTTGTCTCAGCCCCGCTTTGTTAGTTGAAAATGGAAAGTTCCTCCTTTCTGCTAAGAGGACGAGGAGAACAACTTACACAGAGTATGTTATTTCAATGGATGCTGGCAACATCTCTAGATCAAGCAACACTTACATAGGAAAGCTGCGATCAAACTTTCTTGGCACCAAATTCATCATATATGATACACAGCCTCCATACTCTTCTGCCCACATATGCCCTCCTGGGACTGGGAGGACAAGCCACAGATTTTACTCCAAAAAGGTCTCACCAAAGGTCCCATCTGGGAATTACAACATAGCTCAGGTAACGTATGAATTAAATGTGCTTGGGACAAGAGGCCCAAGGAAGATGCATTGCATCATGCATTCAATACCAGCCTCCACACTTGATGCAGGTGGCACTGTTCCTGGCCAGCCAGAGCTTCTTCCGTGTTCCCTTGAGGACTCCTTTCGCAGCATCTCGTTCTCGAAGTCCCTAGATCATTCCATCGAGTTCAGCAGTGCACGATTTTCTGAGATTGGAGGATCCTGTAATGAGGACAACGATAACAAGATGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAATGCTGGTGCCTTAATTTCCGCGGAAGGGTTACTGTTGCATCGGTTAAAAACTTTCAGTTGATTGCCGCAACCCAACCAGCTGCTGGTGCACCAACACCATCTCAGCCGGCAGCACCGCCAGAGCATGATAAGATTATTCTGCAGTTTGGCAAAGTTGGGAAGGACATGTTCACCATGGATTATAGGTATCCTCTATCTGCATTCCAGGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 1287 0.4522 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSVQDLHHQSLVIQSSRWASLPPELLYDVIRRLEESENTWPSRKHVVACAAVCQSWRNMCKEIVKSPEICGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDAGNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGRTSHRFYSKKVSPKVPSGNYNIAQVTYELNVLGTRGPRKMHCIMHSIPASTLDAGGTVPGQPELLPCSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDNDNKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0039 428 Pfam Tub family 114 423 IPR000007 -
Lan16g0039 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Lan16g0039 428 Gene3D - 48 101 - -
Lan16g0039 428 SUPERFAMILY Tubby C-terminal domain-like 102 428 IPR025659 -
Lan16g0039 428 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Lan16g0039 428 PANTHER TUBBY-RELATED 1 428 - -
Lan16g0039 428 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Lan16g0039 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Lan16g0039 428 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lan16g0039 428 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lan16g0039 428 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lan16g0039 428 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Lan16g0039 428 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Lan16g0039 428 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Lan16g0039 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Lan16g0039 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Lan16g0039 428 Gene3D Tubby Protein; Chain A 112 422 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0039 Lan-Chr16 188576 192397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0039 1 428 TUB Transcription Factor Family AT1G76900 69.247 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan16g0039 Tub 1.7e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0039 K19600 - gmx:100814578 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0760 4 9729724 9734113 Lan16g0039 16 188576 192397 LSH