Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0034 ATGCCTAAGTCGAAGAGAAATAAACAAGTTACTTTATCAAAGACGAAGAAAAAGGGAAGGGATCATAAAGAAGGGATAGTGAACTCGATAAAAGATGCTTCTGAGAAATACAGTTCAGTTTACGTGTTTTCATTCGAGAATATGAGGAATCAGAAATTAAAGGAGTTTAGGGAACAATTGAAATCGAGTAGCAGATTCTTTTTGGGTTCTAACAAAGTTATGCAAGTTGCTTTAGGTCGATCTCCTTCTGATGAAATTAGACCTGGACTTTATAAGCTTTCTAAGCTTTTGCGTGGAGATGCTGGAATGGTTTTTACCAATTTGGATAAAGGAGAAGTTGAAAGGCTGTTTAATGAGTTTGAGGAATATGACTTTGCAAGAACTGGAACCATTGCCACTGAAAAGGTGGATCTCAAAGAGGGTCCTCTAGAGCAGTTCACACATGAGATGGAACCCTTTCTCCGGAAGCAAGGCATGCCTGTTAGGTTGAATAAAGGAGTTGTGGAGCTTGTTTCGGATTATGTTGTTTGTGAGGAAGGGAAGCCCTTGTCACCCGAGGCAGCTCGTATACTGCGTTTGCTGGGAATCAAGATGGCTACATTTCGACTTCATTTGATTTGCAGATGGAGTCCTGAAGAATTTGAACTTTACATTGATGGCCCTGATGATTCAGATGTTGAGGGCTCTTAG 690 0.4043 MPKSKRNKQVTLSKTKKKGRDHKEGIVNSIKDASEKYSSVYVFSFENMRNQKLKEFREQLKSSSRFFLGSNKVMQVALGRSPSDEIRPGLYKLSKLLRGDAGMVFTNLDKGEVERLFNEFEEYDFARTGTIATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDYVVCEEGKPLSPEAARILRLLGIKMATFRLHLICRWSPEEFELYIDGPDDSDVEGS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0034 229 PANTHER RIBOSOME ASSEMBLY FACTOR MRT4 1 228 - -
Lan16g0034 229 MobiDBLite consensus disorder prediction 1 25 - -
Lan16g0034 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Lan16g0034 229 Pfam Ribosomal protein L10 19 120 IPR001790 -
Lan16g0034 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 228 - -
Lan16g0034 229 MobiDBLite consensus disorder prediction 1 16 - -
Lan16g0034 229 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Lan16g0034 229 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Lan16g0034 229 Gene3D - 125 198 IPR043164 -
Lan16g0034 229 Gene3D - 30 212 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0034 Lan-Chr16 155295 157417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0034 35 216 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 23.684 1.09e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0034 K14815 - gmx:100500064 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0763 4 9738340 9755118 Lan16g0034 16 155295 157417 LSH