Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0029 ATGTCTCTAACAAACCCACGTCCTGGTGTTATTGTGAATGGAGTTAGAAGAATGAGAAGATTCCACTATTTCTGGTGCCTAAATTGCCAACGTACTGTGAGGATACCCTTTACAAATCCAAATGGTTCTTTATGTCCCTATTGCTTCCATTATTTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATCAATAATCATAATAATAATAATATGCCTGCTACTCAGCTAATGAATGACTTGTCTCTCATTCTTGATCCATCTCTAAGGAGACAACACAACAACAACAACAACAACCATTTCAACACAACAACACAATGGGATACAGAAAGTGATGAAGATGGTTCAAATAATCCACAGGCTTGGATTACTCTTCGGTTTGTTAGACCAACTCGTCCACCAAGGCAATTGCTTCCTCCTCAAGCAAACAACAACAACAACAACCCTTTTGAGAATAATACATTATTAGATGATGGCTTCATTGATCAAACAATGGTTGTTAATAGTAGACCAGGGCCACCTCCAACAGCATCTTCAGCAATTGCAGCATTACCAATAGTTAAAGTAACACAATCCCATTTGGCAAGTGACCCTAATTGCCCTATTTGCAAAGATGAATTTGAGGTTGGTGTGGAAGTTAGAGAGTTGCCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCTTGGCTGCAAATCCACAACACTTGCCCTGTATGCCGCTATGAGTTACAAGCAGTTCCTAATGCTGATTACCATACTCACAGTGAGAATGAGTATGCCTTTGGCTTTGGCTTTGGCCTTGAAGATGTTGCAAGCAGCTTCAACTGGATTTGGAACCAGTTGGCTTCTTTTAGGCCTATCCGTGCAGTCCTGGGTTGGACACAAAGACATTATGCTCATGGTGCCCAAGGTAGTCCTTGGTGGCGTGCATTACTCATTTTATAG 951 0.4132 MSLTNPRPGVIVNGVRRMRRFHYFWCLNCQRTVRIPFTNPNGSLCPYCFHYLRYELDISRPRLLINNHNNNNMPATQLMNDLSLILDPSLRRQHNNNNNNHFNTTTQWDTESDEDGSNNPQAWITLRFVRPTRPPRQLLPPQANNNNNNPFENNTLLDDGFIDQTMVVNSRPGPPPTASSAIAALPIVKVTQSHLASDPNCPICKDEFEVGVEVRELPCKHFYHSDCILPWLQIHNTCPVCRYELQAVPNADYHTHSENEYAFGFGFGLEDVASSFNWIWNQLASFRPIRAVLGWTQRHYAHGAQGSPWWRALLIL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0029 316 Pfam Ring finger domain 200 242 IPR001841 -
Lan16g0029 316 CDD RING-H2_RNF126_like 201 242 - -
Lan16g0029 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 248 IPR013083 -
Lan16g0029 316 MobiDBLite consensus disorder prediction 95 119 - -
Lan16g0029 316 SMART ring_2 201 241 IPR001841 -
Lan16g0029 316 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Lan16g0029 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 22 295 - -
Lan16g0029 316 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 22 295 - -
Lan16g0029 316 SUPERFAMILY RING/U-box 182 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0029 Lan-Chr16 132242 133641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0029 7 297 C3H Transcription Factor Family AT1G68180 32.423 2.84e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0029 K11982 - gmx:100793656 359.762