Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0023 ATGACTTATAATCACAACCATAGTCTTATACAATATCCTCCAAAAAAGATGAATTTTTTTCATGTTATGATGCTTCCTTTGTTCTGTGCACTGTTTGTATCAATGAGTATGAGCTCAGTATATTCAACAGCCACTAACCCTTCTCTCTCTTCTTCTTCATCCACATGTCCTATGGACCTTAACTATGTGTTAAGAATCCCGTGGAACTCTTCTGCTTGTGAAAACTTTGACAAAAACTCAAGCTCTTGTTGCCAAAATTTGTTATCACTTTTTGGTATAGCACTTGCACAACACCTGAAAGAAACCTCTGATTTCAACCTCCCTGATGTTTCTACCTCTGACTCATGCCTTGAAGATTTCCAGTCCAAGCTCACTTCCCTTTCACTCCCTAATAGTATTGTCAATTCTTGCTTTGACCCTCTTCAGTTTGTTATCTCCCCTCATGTTTGTGCAAATATTCAAACTATTCCAGATTGGATCACCAAGGTTGGTAATAACACAGCACTTCAATCTGGATGTAAACCAGACCTCACTGATCTTTCTCTATGTGATGTGTGCCTGGCAGCAGGCTTTCAGGTAAAGCAGGAACTGGTTTCAATTGATGGTAATGCTTCTCATTCCATAAATTGCTTTTACTTCACCGTTCTTTATGCTGCTGGATTTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTCACTTGCATTTTTGGATCTGGAGTAGCATTGTTGGTAATGTGTTCTTTGTTGGGGCTGTATGTTTGGTATGATAGGAAGTGTAAGAGGAAGAAGCTTGAAACTTTAGACTATGATTTTGACCCTGAGGAACAAGGGTCTAGGCCTAGAATGAGGCCTAATACAGGGTCAATTTGGTTTAAAATTGAGGAACTTAAGAAAGCTACTGATAAGTTTTCAACTAAGAACTTCATAGGGCGAGGTGGGTTTGGATTGGTTTTCAAGGGAACATTGCCTGATGGTACCGTTGTTGCAGTGAAAAGGATTTTAGAGTCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTGGAGATCATTAGCAATCTGAAGCACCGCAATCTGGTGCCTCTTAGAGGGTGTTGTGTGGTTGATGAGAATGAGAATCTTGATGAGAATGGAAGCCAACGGTATCTCGTTTATGATTACATGCCAAATGGTAACTTGGAAGACCATCTCTTTGTATCTGCCGACCCTAAAAAGGTGAATAAATCGTTGACTTGGCCTCAAAGAAAAACCATTATCTTGGATGTGGCGAAGGGATTGGCTTATTTGCACTATGGAGTTAAGCCTGCAATATTTCACAGGGATATCAAAGCCACAAATATACTGCTTGATGCAGAAATGAGGGCAAGAGTTGCAGATTTCGGTCTTGCGAAACAAAGCAGGGAGGGTCAGTCTCATCTAACTACTAGAGTAGCCGGTACTCATGGATATCTAGCACCAGAATATGCACTTTATGGTCAACTAACCGAGAAAAGCGATGTCTATAGCTTCGGAGTGGTTGTTTTGGAGATAATGTGTGGCAGGAAAGCTCTTGATTTGTCTCCAACAGGTTTGTCGCGGGCGTTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAATCAGGGAATATAGAAGAGGCTTTGGATGGTTCATTGTTAAAAGATGAAGACTATCCTAATTCAAATCCTAAGAGCATAATGGAAAGGTTTTTGTTGGTGGGAATTCTATGTTCTCATGTTATGGTTGCTTTGAGGCCAACAATTTCTGATGCTTTGAAGATGCTTGAAGGTGATATTGAAGTTCCAACAATCCCGGATCGGCCTATGCCTCTAGGGGACCCTTCATTTTATGGTAATGATGGCAATACTTTTAGCATTTCCCCTGCATTAAGTGGCCCAAAACTGCAAAGTGGAGACATGCTCAGGTAA 1929 0.409 MTYNHNHSLIQYPPKKMNFFHVMMLPLFCALFVSMSMSSVYSTATNPSLSSSSSTCPMDLNYVLRIPWNSSACENFDKNSSSCCQNLLSLFGIALAQHLKETSDFNLPDVSTSDSCLEDFQSKLTSLSLPNSIVNSCFDPLQFVISPHVCANIQTIPDWITKVGNNTALQSGCKPDLTDLSLCDVCLAAGFQVKQELVSIDGNASHSINCFYFTVLYAAGFVNEFGPESNGAVTCIFGSGVALLVMCSLLGLYVWYDRKCKRKKLETLDYDFDPEEQGSRPRMRPNTGSIWFKIEELKKATDKFSTKNFIGRGGFGLVFKGTLPDGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVVDENENLDENGSQRYLVYDYMPNGNLEDHLFVSADPKKVNKSLTWPQRKTIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDAEMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSPTGLSRAFLITDWAWSLVKSGNIEEALDGSLLKDEDYPNSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPTIPDRPMPLGDPSFYGNDGNTFSISPALSGPKLQSGDMLR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0023 642 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 237 639 - -
Lan16g0023 642 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 45 239 - -
Lan16g0023 642 ProSiteProfiles Protein kinase domain profile. 304 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0023 642 Pfam SPARK 51 211 IPR043891 -
Lan16g0023 642 SMART serkin_6 304 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0023 642 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 45 239 - -
Lan16g0023 642 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 237 639 - -
Lan16g0023 642 CDD STKc_IRAK 310 597 - -
Lan16g0023 642 Pfam Protein kinase domain 305 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0023 642 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Lan16g0023 642 Gene3D Transferase(Phosphotransferase) domain 1 389 602 - -
Lan16g0023 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Lan16g0023 642 Gene3D Phosphorylase Kinase; domain 1 275 388 - -
Lan16g0023 642 SUPERFAMILY Protein kinase-like (PK-like) 280 596 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0023 Lan-Chr16 115647 118239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0023 45 642 Receptor kinase-like Gene Family AT1G11050 63.040 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lan16g0023 Pkinase 9.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0023 - - gmx:100806560 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g1082 19 17963534 17966446 Lan16g0023 16 115647 118239 LSH
Lan16g0023 16 115647 118239 Lan12g0571 12 12470656 12472607 PCT