Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0016 ATGGAGACCCAACTCAATCACACTCACTTTCAGAGGCGCCCCTTCCTCAACTCCAACGCTCCTCCCGTTAAATGGGTCAAACATTGGATTCCCCAAGATGTTGTAACAACCGGCGGAAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACCTTAAAGGCCTTGAATGAAAAGGAAAAAGAGCCTTCAGCACCTGAGCCAGAACCAGAGCCAACTACTGAAGTGCTTTTCCTGTGCAGCTATGACGGCTGTGGAAAGACATTCATAGATGCTAGTGCTTTGAAGAAGCACTCTAACATCCACGGAGAAAGGCAATTTGTTTGCCACTACAAGGGATGTGGAAAGAAATTTCTCGACAGCTCAAAGCTAAAAAGACACTTCCTCATTCATACAGGGGAAAGACATTTCGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCACTGGATTTCAATCTGAGGTCTCACATGAAAACTCATTCACAAGAGAACTATCATCTCTGCCCTTACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTGAGGAACCACATTGCGTCTCTTCATGAAAAGAATGCATCGGTGGAAGTGACAAGGTATACTCCGCCATCAGACAAGCACACAAAAACTGCTAAACCTTCAGGGACAGCTTGTTCTGCATCATCTGATCGTCCATATGCATGTCCTTATGATGGGTGTCAAAAAGCGTACATCCATGAATACAAGCTTAAACTCCATTTGAAGCGGGAGCATCCCGGCCATGATGAAAATGCTGTGCTGCATGCTCTGGCTAATGCTGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGTGTATGGTGCTGTGAAACGATCAAATGGTAAAAGTCAGAAGAAGCAAAGCAATCCCAAGCCAAAGATGAAGTTGCCTCCTTCCAAAATTGCCCGGAGAAAAGGGTCAGCTCCAACTCCTTCTTCCACTTTAAATGTGGCTAAAAGACCTTGGACAGTGAAAGATGAAACTGGTGATGATGATAGTGAAGAAACTGAGGATGGTGACAATGCTGAAGATGGTTGGAGATATGGTGGAAACAATGATGATTTTGATGATGAAACAGAGGATGAAGATTGA 1119 0.4441 METQLNHTHFQRRPFLNSNAPPVKWVKHWIPQDVVTTGGKCMLLRWVTEDTLKALNEKEKEPSAPEPEPEPTTEVLFLCSYDGCGKTFIDASALKKHSNIHGERQFVCHYKGCGKKFLDSSKLKRHFLIHTGERHFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHLCPYPDCGKRYAHEYKLRNHIASLHEKNASVEVTRYTPPSDKHTKTAKPSGTACSASSDRPYACPYDGCQKAYIHEYKLKLHLKREHPGHDENAVLHALANAADNEMDEASDQDVYGAVKRSNGKSQKKQSNPKPKMKLPPSKIARRKGSAPTPSSTLNVAKRPWTVKDETGDDDSEETEDGDNAEDGWRYGGNNDDFDDETEDED* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0016 372 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lan16g0016 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Lan16g0016 372 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Lan16g0016 372 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Lan16g0016 372 Gene3D Classic Zinc Finger 77 103 - -
Lan16g0016 372 Pfam Zinc finger, C2H2 type 168 191 IPR013087 -
Lan16g0016 372 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Lan16g0016 372 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Lan16g0016 372 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Lan16g0016 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Lan16g0016 372 MobiDBLite consensus disorder prediction 202 225 - -
Lan16g0016 372 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 372 - -
Lan16g0016 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 258 IPR013087 -
Lan16g0016 372 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Lan16g0016 372 MobiDBLite consensus disorder prediction 287 372 - -
Lan16g0016 372 Gene3D Classic Zinc Finger 104 133 - -
Lan16g0016 372 Gene3D Classic Zinc Finger 134 159 - -
Lan16g0016 372 SUPERFAMILY beta-beta-alpha zinc fingers 222 251 IPR036236 -
Lan16g0016 372 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Lan16g0016 372 MobiDBLite consensus disorder prediction 209 223 - -
Lan16g0016 372 ProSitePatterns Zinc finger C2H2 type domain signature. 230 253 IPR013087 -
Lan16g0016 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 196 IPR013087 -
Lan16g0016 372 PANTHER BNAA03G13270D PROTEIN 4 372 - -
Lan16g0016 372 SMART c2h2final6 136 160 IPR013087 -
Lan16g0016 372 SMART c2h2final6 106 130 IPR013087 -
Lan16g0016 372 SMART c2h2final6 77 101 IPR013087 -
Lan16g0016 372 SMART c2h2final6 166 191 IPR013087 -
Lan16g0016 372 SMART c2h2final6 228 253 IPR013087 -
Lan16g0016 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Lan16g0016 372 Gene3D Classic Zinc Finger 160 203 - -
Lan16g0016 372 Gene3D Classic Zinc Finger 204 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0016 Lan-Chr16 84780 88327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0016 10 358 C2H2 Transcription Factor Family AT4G06634 62.125 4.26e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan16g0016 zf-C2H2 0.014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0016 - - zju:107403391 539.265