Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0006 ATGGGAAGGAAAAAGACAGAGGATGCAATATCATCTGCAAAGGCTAAAGCAGGTGGCAAGGATACTACTAAGAAGGAAAAGTTTTCTGTATCTGCCATGCTAGCCGGTATGGATGAAAAACCTGATAAACCCAAAAAGGTTGCTTCTTCATCTACCAAGCTCAAGTTCAAGTCTGCCCCAAAAGCTTCCGTATACACTGATGGCATTGATCTTCCCCCCTCTGATGATGAAGAAGATGAAGATCTCTTGGAACAGGAACAACAACAACAACAAAACAATACATCCAAACGGCCTGATGTCAAACAACTTGAGGTATCTATTGCCGAAAAGGAGTTGAAGAAGCGTGAAAAGAAGGACATTTTAGCTGCCTACGCTGTTCAGCAGGCAAAGAAGGAAGCTCTTAAGGATGATCATGATGCTTTCACTGTGGTCATCGGAAGCAGAACTTCTGTCCTTGATGGAGAAGATGATGCTGATGCTAATGTCAAAGATATAGCCATAGACAATTTCTCTGTCTCTGCTCGGGGTAAAGAACTCATGAAGAATGCTTCAGTCAGGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCCAACGGAAAGGGCAAATCCACCCTACTCAAGCTTCTTGCTTGGAGGAAGATACCAGTGCCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTTGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCTAATGAAGAACTTGTTAAAATTCGACAAGAAGTTGCTTCTCTGCAAAGTGAAACTAATGTTGAAGGAAGCGTAGACAAAGATAATAATGCTGAGGAAGATGATGCAGGAGAGAAGCTAGCTGAGCTCTATGAGAAATTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAGGCATCAAAGATCTTGGCTGGTCTGGGTTTTACAAAGGATATGCAGGTCCGTCCTACGAAATCCTTCAGCGGTGGTTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTACTATTGCTTGATGAACCCACAAATCATCTTGACTTGAGAGCTGTTCTCTGGTTAGAGGAGTACTTGAGCCATTGGAAGAAGAGTTTGGTGGTTGTCTCACATGATAAAGATTTCCTCAATACAGTTTGCTCTGAGATTATTCATCTGCATGATTTGAAACTCCATGTCTATCGTGGAAATTTTGATTCTTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATGAATAAGAAATATGAGGTTTATGACAAGCAATTGAAAGCAGCTAAAAGGAGTGGAAACCGTACTCAGCAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCAGCAGCCAAGGAAGCATCTAAAAGCAAGGGGAAAGGAAAGGTTGATGAGGATGATGCTCTGCAAGAGGCGCCACGGAAATGGAGGGACTACAGTGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTTTGCAGCTTATTGAAGTGAGCTTCAGCTACCCGAATCGGGAGGATTTTAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGTCCTAATGGAGCTGGAAAGTCAACACTGTTGAATCTTCTAGCTGGTGATTTGGATCCAAGTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGAATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACGATGGATGAAACACCTGTTCAGTATCTTCTTCGTCTCCATCCTGACCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGAGCTAAACTCGGTAAGTTTGGATTACCTAGTCATAACCATCTTACCCCTATTGCCAAACTGTCTGGAGGGCAGAAATCTCGTGTTGTCTTCACGTCGATATCCATGTCAAAACCCCACATTTTATTGTTAGATGAACCCACAAATCATCTAGATATGCAGAGTATCGATGCATTGGCTGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTGAGTCATGATTCTAGATTGATATCACGTGTATGTGATGATGAAGAGAGGAGTCAAATCTGGGTTGTTGAAGATGGTACTTGCAGAACTTTCCCTGGAACATTTGATGATTACAAGAATGAGTTGTTGAGAGAAATTAAAGCTGAAGTTGAGGATTGA 2178 0.4316 MGRKKTEDAISSAKAKAGGKDTTKKEKFSVSAMLAGMDEKPDKPKKVASSSTKLKFKSAPKASVYTDGIDLPPSDDEEDEDLLEQEQQQQQNNTSKRPDVKQLEVSIAEKELKKREKKDILAAYAVQQAKKEALKDDHDAFTVVIGSRTSVLDGEDDADANVKDIAIDNFSVSARGKELMKNASVRISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKIRQEVASLQSETNVEGSVDKDNNAEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQVRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLSHWKKSLVVVSHDKDFLNTVCSEIIHLHDLKLHVYRGNFDSFESGYEQRRKEMNKKYEVYDKQLKAAKRSGNRTQQEKVKDRAKFAAAKEASKSKGKGKVDEDDALQEAPRKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLDPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTCRTFPGTFDDYKNELLREIKAEVED* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0006 725 Coils Coil 415 435 - -
Lan16g0006 725 Pfam ABC transporter 181 351 IPR003439 GO:0005524
Lan16g0006 725 Pfam ABC transporter 515 650 IPR003439 GO:0005524
Lan16g0006 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 723 IPR003439 GO:0005524
Lan16g0006 725 CDD ABCF_EF-3 498 700 - -
Lan16g0006 725 PANTHER - 6 725 - -
Lan16g0006 725 Gene3D - 461 725 IPR027417 -
Lan16g0006 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 712 IPR027417 -
Lan16g0006 725 MobiDBLite consensus disorder prediction 1 100 - -
Lan16g0006 725 ProSitePatterns ABC transporters family signature. 323 337 IPR017871 GO:0005524
Lan16g0006 725 MobiDBLite consensus disorder prediction 71 85 - -
Lan16g0006 725 CDD ABCF_EF-3 165 396 - -
Lan16g0006 725 MobiDBLite consensus disorder prediction 432 470 - -
Lan16g0006 725 Coils Coil 241 261 - -
Lan16g0006 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 404 IPR027417 -
Lan16g0006 725 Gene3D - 164 447 IPR027417 -
Lan16g0006 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 426 IPR003439 GO:0005524
Lan16g0006 725 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 6 725 - -
Lan16g0006 725 SMART AAA_5 189 395 IPR003593 -
Lan16g0006 725 SMART AAA_5 524 700 IPR003593 -
Lan16g0006 725 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0006 Lan-Chr16 42042 44907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0006 498 699 Calmodulin-binding Proteins AT2G36910 28.054 1.54e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0006 K06184 - gmx:100806226 1180.24