LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan15g1247	ATGTCTTCTGACTCTTCAGATTCACCTCCACCTGAGTCAAATACCCCACCATCATCATCACCACCACCACCATCGGATGATAATTCATCATCACCGCCACCACCATCTGGTGATAACTCATCACCACCACCACCATCAGATTCCTCTCAATCTCCACCACCACCATCGGATGATAACTCGCCACCACCTTCATCTCCCCCGCCATCATCTCCTCCACCATCATCACCACCACCACCATCGGATGATCAAAAATCTCCACCCCCGCCCGATAATGACAATGGCTCATCCCAATCTCCTCCTCCTCCTCCTCCTAACAATAAATCACCAAACCACCAGCCTCCACCACCACCTAGCGTAGGAAACGGGAAGTTTTCTCCCCCGCCGCCGCGTCATGAATTGTCTGAGCCATCACCAAATTCAGGTAAATCAAATAATACGCCATCATCAGATGGGGGTGGTGGGAGCAGTATCGGCGTGCCAGCTATAATAGGCATTGCAGCTGGAGCTGGATTATTGCTTCTTGTGGCTATACTACTCATCATTGCATGTTCAAGAAGGAAGAAAAAATCATCAGACTCTCCCGTTCGTTACTTTAATCATACATCAGATGATAACTATTTTAAACGTCAAAATCCTCCAGCAGCAGGTCCAAATCAGTATGGTTACAACAATAACAGAGAACACGTTCTTAACATACCACCACCACCCGGTGCAGTTTGGGGTGGAGCACTAACTCCTCCACCACCACCACCACCTCAATTTAATAGTAGTGAAATGAGCAGCTCAAGTTACTCTAACTCCGGGCCCCATGGTCCTGTTCTGCCACCACCACATCCTTCTGTGGCACTTGGGTTCAACCAGAGCAGTTTCACATTTGAAGAGCTTTCTGCTGCTACTAGTGGATTTACACAAAGGAACTTACTTGGTGAAGGTGGGTTTGGATATGTACACAAAGGTTTTCTTCCTAATGGTAAAGAGATTGCAGTTAAGAGCCTTAAATCCACTGGGGGACAAGGAGATAGAGAATTCCAAGCTGAGGTTGATACTATCAGTCGTGTGCATCATCGACATCTTGTCTCACTTGTTGGGTATAGCATTTCAGACAGCAAAAAGCTGCTCGTGTATGAATTTGTTCCTAACAAAACCCTTGAATATCATCTTCATGGGAAGGGTCGACCTGTAATGGATTGGGGCACCAGGCTTAGAATTGCGATTGGATCAGCCAAAGGACTTGCTTACCTACATGAGGATTGTCATCCTCGTATCATTCACCGAGACATAAAGGCTGCAAACATTCTAATCGAAAACAACTTCGATGCCAAAGTATCAGATTTTGGATTGGCAAAGTTTAGTCAAGACACTAACACTCATGTTTCTACTCGCGTGATGGGAACATTTGGGTATATGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACTGATAAATCTGATGTATTCTCGTACGGTATTATGCTTTTGGAACTAATAACTGGACGACGCCCAATTGATAACACCGCTCAATATGAGGACCAGAGTTTGGTTGACTGGGCTCGGCCAGTTTGCGTGAAGGCGATCGAAAGTGGAAGCTTCGAGGAGCTGGTGGATCCACGTTTAGAGGGAAATTATATCATACAAGAGATAGCACACATGGTGGCTTGTGCTTCTGCTTGCGTTAGGCACTCAGCAAAGAGACGACCAAGAATGAGCCAGGTTGTACGAGTACTGGAGGGTGATGTGTCACTAGATGTGCTTAACCACGAGGGAGTGAAACCTGGGCAAAGTACAATGTACAGCGGTGCAAGTAGCGGAGAATATGGTGCTAGTGCCTACCTTGCTGATATGAAACAGTTCAAGAAACTAGCATTAGAAAGTGGCACTGCTAACAGTGATTTATATGGTAACACAAGTGAGTATGGCCTCAACCTTTCTGCCTCAAGCAGTGACCAATCAACTACTGAATATACCAAGGGAACAGGAATAAGCAGGGACCATACTCTTCATGAATCAGAAACTCATTAA	2019	0.4581	MSSDSSDSPPPESNTPPSSSPPPPSDDNSSSPPPPSGDNSSPPPPSDSSQSPPPPSDDNSPPPSSPPPSSPPPSSPPPPSDDQKSPPPPDNDNGSSQSPPPPPPNNKSPNHQPPPPPSVGNGKFSPPPPRHELSEPSPNSGKSNNTPSSDGGGGSSIGVPAIIGIAAGAGLLLLVAILLIIACSRRKKKSSDSPVRYFNHTSDDNYFKRQNPPAAGPNQYGYNNNREHVLNIPPPPGAVWGGALTPPPPPPPQFNSSEMSSSSYSNSGPHGPVLPPPHPSVALGFNQSSFTFEELSAATSGFTQRNLLGEGGFGYVHKGFLPNGKEIAVKSLKSTGGQGDREFQAEVDTISRVHHRHLVSLVGYSISDSKKLLVYEFVPNKTLEYHLHGKGRPVMDWGTRLRIAIGSAKGLAYLHEDCHPRIIHRDIKAANILIENNFDAKVSDFGLAKFSQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSYGIMLLELITGRRPIDNTAQYEDQSLVDWARPVCVKAIESGSFEELVDPRLEGNYIIQEIAHMVACASACVRHSAKRRPRMSQVVRVLEGDVSLDVLNHEGVKPGQSTMYSGASSGEYGASAYLADMKQFKKLALESGTANSDLYGNTSEYGLNLSASSSDQSTTEYTKGTGISRDHTLHESETH*	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan15g1247	672	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	16	628	-	-
	Lan15g1247	672	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5	16	628	-	-
	Lan15g1247	672	Gene3D	Phosphorylase Kinase; domain 1	279	377	-	-
	Lan15g1247	672	ProSitePatterns	Protein kinases ATP-binding region signature.	308	330	IPR017441	GO:0005524
	Lan15g1247	672	SUPERFAMILY	Protein kinase-like (PK-like)	281	575	IPR011009	-
	Lan15g1247	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	422	434	IPR008271	GO:0004672\|GO:0006468
	Lan15g1247	672	MobiDBLite	consensus disorder prediction	136	152	-	-
	Lan15g1247	672	Pfam	Protein tyrosine and serine/threonine kinase	305	574	IPR001245	GO:0004672\|GO:0006468
	Lan15g1247	672	Gene3D	Transferase(Phosphotransferase) domain 1	378	585	-	-
	Lan15g1247	672	SMART	serkin_6	302	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan15g1247	672	MobiDBLite	consensus disorder prediction	643	659	-	-
	Lan15g1247	672	ProSiteProfiles	Protein kinase domain profile.	302	589	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan15g1247	672	MobiDBLite	consensus disorder prediction	239	255	-	-
	Lan15g1247	672	MobiDBLite	consensus disorder prediction	643	672	-	-
	Lan15g1247	672	MobiDBLite	consensus disorder prediction	1	152	-	-
	Lan15g1247	672	MobiDBLite	consensus disorder prediction	189	280	-	-
	Lan15g1247	672	MobiDBLite	consensus disorder prediction	10	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan15g1247	Lan-Chr15	20787122	20790652	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan15g1247	107	656	Trihelix Transcription Factor Family	AT1G70460	47.764	1.03e-159	475

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Lan15g1247		PK_Tyr_Ser-Thr	2.1e-44	CL0016