Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1240 ATGACTCCTCCTTTTAGATTTTTAACCGACGATCGCTTCTCGTCTGATTCCTCCGCCACCGTCATCGGCTCCGACTACGTCATCATCATCGCTGCCCTCACCTGCGCCTTCATCTGCCTCCTCGGCCTCGTCGCTATTGCTCGCTGCGCCTGTCTCCGCCGTCTCCATATTTCCTCTACTGCCGCCACTCCTCAATTTCCTCCTATCCACGCCGACGCCAACAGAGGCGTCAAGAAGAAGGTCCTCCGCTCTCTCCCTAAGCTCACCGCCACCGCTGAATCCGCCGTCAAATTGTCCGATTGCGCTATCTGCCTGAGCGAGTTCGCTGCCGGTGAGGAAATTCGAGTGTTGCCTCAGTGTGGCCATGGATTCCATGTAAGCTGCATCGACACGTGGCTCAAATCGCATTCTTCGTGCCCGTCGTGCCGTCAGATTCTGGTTGTTTCACGGTGCCAGAAGTGCGGTGGTTTCCCTGCCTCTGCCAGCTCCGGCTCGTCCTCCGCCGCCGAACCGGAAACGGAAACGGATCCGGAGGCGAGATCAAAGGTTAGGGAAAGAGAAAACGATACCAATATAGGTTCTTGTCTTAGCTGA 594 0.564 MTPPFRFLTDDRFSSDSSATVIGSDYVIIIAALTCAFICLLGLVAIARCACLRRLHISSTAATPQFPPIHADANRGVKKKVLRSLPKLTATAESAVKLSDCAICLSEFAAGEEIRVLPQCGHGFHVSCIDTWLKSHSSCPSCRQILVVSRCQKCGGFPASASSGSSSAAEPETETDPEARSKVRERENDTNIGSCLS* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1240 197 PANTHER RING-H2 FINGER PROTEIN ATL8 1 175 - -
Lan15g1240 197 SMART ring_2 101 142 IPR001841 -
Lan15g1240 197 CDD RING-H2_PA-TM-RING 100 143 - -
Lan15g1240 197 SUPERFAMILY RING/U-box 84 149 - -
Lan15g1240 197 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lan15g1240 197 MobiDBLite consensus disorder prediction 158 172 - -
Lan15g1240 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 147 IPR013083 -
Lan15g1240 197 MobiDBLite consensus disorder prediction 173 189 - -
Lan15g1240 197 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 175 - -
Lan15g1240 197 Pfam Ring finger domain 100 143 IPR001841 -
Lan15g1240 197 MobiDBLite consensus disorder prediction 158 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1240 Lan-Chr15 20737671 20738441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1240 5 154 C3H Transcription Factor Family AT1G20823 59.627 7.95e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1240 - - lang:109328101 384.03