Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1238 ATGAAAGGTGGAAAGTCAAAGACCGAGTCTAAGAGAGCCGATCCTAAACTTGCTGTGAACAAGAAGGGTGGCGCCACCACCAAAGGTGCTCGGAAACCTGCTAAGGGAAAGGCGGCTAAGGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGGAGGAATTCAGGAAACAATTCAACAAGGAAAACCCTGACAACAAAGCTGTTTCCGCTGTGGGCAAAGCTGCTGGGGCAAAGTGGAAGACCTTGTCTGAGGCTGATAAAGCACCATATGTTGCAAAAGCGGGGAAACGAAAGCAAGAGTATGAGAAGAGCATAAAAGCATATAACAAGAAGCAGGAAGAAGGTCCTACTGCTACCGAGGAGGAATCTGAGAAGTCATTATCTGAGGTGGAGGATGACGATGAAGACGATGATGATGAGGATGATGATGATGAGTAG 453 0.4746 MKGGKSKTESKRADPKLAVNKKGGATTKGARKPAKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKTLSEADKAPYVAKAGKRKQEYEKSIKAYNKKQEEGPTATEEESEKSLSEVEDDDEDDDDEDDDDE* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1238 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 147 - -
Lan15g1238 150 PRINTS High mobility group (HMG1/HMG2) protein signature 79 98 - -
Lan15g1238 150 PRINTS High mobility group (HMG1/HMG2) protein signature 98 118 - -
Lan15g1238 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Lan15g1238 150 Coils Coil 96 116 - -
Lan15g1238 150 MobiDBLite consensus disorder prediction 130 150 - -
Lan15g1238 150 MobiDBLite consensus disorder prediction 87 150 - -
Lan15g1238 150 Gene3D High mobility group box domain 29 136 IPR036910 -
Lan15g1238 150 MobiDBLite consensus disorder prediction 1 18 - -
Lan15g1238 150 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Lan15g1238 150 MobiDBLite consensus disorder prediction 1 51 - -
Lan15g1238 150 SUPERFAMILY HMG-box 34 124 IPR036910 -
Lan15g1238 150 MobiDBLite consensus disorder prediction 95 129 - -
Lan15g1238 150 SMART hmgende2 44 115 IPR009071 -
Lan15g1238 150 CDD HMGB-UBF_HMG-box 45 111 - -
Lan15g1238 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 147 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1238 Lan-Chr15 20723232 20725060 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan15g1238 HMG_box 5.4e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1238 K25507 - lang:109352139 180.644