Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1236 ATGAGTTGCTTCTCTTGCATATTTTCTGGTCGTAAAGATGTTAGTAAAGTCCAAATTCACAGTGCATCACGATCTGCTTCTTCTTCAGGAACTGGAGGAGTGAACGTTGCTTCCACTGAGGGTAAAAGGGAGAAGGAATACGCAAATGGGAAAGGGAAGAACGTGAACAATAGGAAGAGAAGCACAGCAGCAGCTAGTTTTGGATTCAGGGAATTGGCTGAAGCAACAAGAGGTTTTAAAGAAGTGAACTTGATTGGGGAAGGTGGTTTTGGAAGGGTTTATAAGGGTCGTATCTCTACTGGGGAGGTTGTTGCCATAAAACAATTAAGTCTTGATGGTCATCAAGGTTTTCAGGAATTTGTGATGGAGGTTCTCATGTTAAGCCTACTCCATCATTCTAATCTTGTTAAGTTAATTGGCTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTACGAATACATGCCTATGGGATCACTCGAAAATCATCTTTTTGATCTTAACCCAGGAAAAGAGCCATTAAGTTGGAGTGTTCGGATGAAGATTGCTGCTGGGGCTGCTCGGGGCCTTGAGTATCTCCATTGTAAAGCTGATCCACCTGTTATTTATCGAGACTTGAAACCAGCGAACATCTTATTAGATAATGAGTTCAACCCAAAACTGTCAGATTTTGGGCTTGCCAAACTTGGACCTGTTGGAGACAAGACCCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCGCCAGAGTATGCCATGAGTGGTAAATTAACTCTCAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACCGGACGTAGGGCAATCGACGGAAGTAGAAGACCAGGGGAGCAAAACTTAGTTTCATGGTCTCGTCCATTCTTTAGCGACCGTCGAAAGTTTACGCAAATGGTTGACCCTCTTTTGGGTGGAAACTTCCCTGTGCGCTGTTTGCATCAGGCAATTGCTATAACTGCAATGTGTCTCCAGGAGCAACCGAAAGTTCGTCCACTCATTGCTGATATTGTTGTTGCACTAGAGTACCTAGCTTCTCAGTGTAATACACATGATGTTCATAGACATGGTGTGCCCAGCCCATCCCTGCAACCAACTTCGTAA 1137 0.4371 MSCFSCIFSGRKDVSKVQIHSASRSASSSGTGGVNVASTEGKREKEYANGKGKNVNNRKRSTAAASFGFRELAEATRGFKEVNLIGEGGFGRVYKGRISTGEVVAIKQLSLDGHQGFQEFVMEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLENHLFDLNPGKEPLSWSVRMKIAAGAARGLEYLHCKADPPVIYRDLKPANILLDNEFNPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDGSRRPGEQNLVSWSRPFFSDRRKFTQMVDPLLGGNFPVRCLHQAIAITAMCLQEQPKVRPLIADIVVALEYLASQCNTHDVHRHGVPSPSLQPTS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1236 378 Pfam Protein kinase domain 79 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g1236 378 SUPERFAMILY Protein kinase-like (PK-like) 60 353 IPR011009 -
Lan15g1236 378 MobiDBLite consensus disorder prediction 21 36 - -
Lan15g1236 378 MobiDBLite consensus disorder prediction 39 53 - -
Lan15g1236 378 SMART serkin_6 79 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g1236 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lan15g1236 378 Gene3D Phosphorylase Kinase; domain 1 38 154 - -
Lan15g1236 378 PANTHER OS07G0668900 PROTEIN 15 366 - -
Lan15g1236 378 CDD STKc_IRAK 85 353 - -
Lan15g1236 378 ProSiteProfiles Protein kinase domain profile. 79 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g1236 378 Gene3D Transferase(Phosphotransferase) domain 1 155 369 - -
Lan15g1236 378 PANTHER OS07G0668900 PROTEIN 15 366 - -
Lan15g1236 378 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Lan15g1236 378 MobiDBLite consensus disorder prediction 21 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1236 Lan-Chr15 20713392 20716136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1236 1 357 Glycoside Hydrolase AT3G07070 59.834 4.49e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lan15g1236 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1236 - - gmx:100796595 565.074