Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1233 ATGAACTTTTCTTCAATGGATGATGATGATGCTGTGTCAGCACCTGGTACTACCATTTTGGATGATGGAACAATCTCAATGGATTTTGATTACATTGATGAACTTTTCTTTGATGGATGTTGGTTTGAAACCACTGCTGAGGGATCTGATTTTCCACCCTTTGACTCTTCATTCTCATGGTGTGCCTTAGAGGAACAACATGAATCACAAGAAGCATTTTTTGATGATGTTAAGGTTGATGATGTTAGTTCTAATCAGCAATATGAATCTGAAATTCAATCATTTGAAGGTACTTCTGAAGGGGTTACAAGGTGGTGGATTGCTCCAACACCTAATAATCCAGGACCAGGTTATTCTGTAATGGAAAAGTTAATGATGGCACTCAACTGCATCCAAGATTTGAATAGGAGCAAAGATATGCTTATACAAATTTGGGTGCCTGTTAATAGAGGGGGTAAGCAGATTCTCACTACTAATGATCTTCAATTCTGCCTTGGAACCAACTCTACAAACCTGGCAAAGTACCGAGAAATCTCGATGAGATATCAGTTTTCGACCGAGGAGGAGGATTCAAAGGGGTTGGTGCCAGGGTTGCCTGGTAGAGTTTTTCGGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGATGAATATCCTAGAGTTGACCATGCTCAAGAGTATGAAGTACGCGGAACATTAGCACTGCCAATATTTGAGCAAGGTAGCAGGACTTGCTTGGGTGTTATTGAGGTTGTGATGACCAGCTCGCAGATCAACTATCGCTCCGAACTTGAGAGTGTTTGCAAAGCACTTGAGGGTGTTGATCTTAGAAGCTCCAAACTTTCAAGCACTCAGAATGTGAAGGCATGCAATAAGTCCTATGAAGCTGTTCTACCTGAGATTAAAGAGGTGTTGAGAGTTGCATGTGAAATGCACAAATTACCTTTAGCTCAAACATGGATCCCATGCATCCAACAAGGCAAAGAGGGGTGCCGGCACTCCGAGGATAATTATTTACACTGCATATCTCCTGTGGAGCATGCTTGCTATGTGAATGATGCTCCTATCCGCGCTTTCCATGATACTTGTTCCGAGCATCACTTGTTAAAAGGACAAGGTGTTGCTGGAGGAGCTTTTATGACAAATCAACCATGCTTCTCAAGTGACATAACTTCGTTAAGAAAGACAGACTATCCACTTTCTCATCATGCAAGAATATTTGGTTTGCAGGGTGCAGTTGCTATACGCCTCCGAAGCATTTATAGTAGTACAGATGACTATGTTCTGGAGTTCTTCTTGCCTGTGAATTGCAATGACAGTGAAGAACAGAAAAAAATGCTTACTTCATTGTCCATGATTATTCAAAGTGTCTGCCATAGCTTGCGGGTTATAACAGATAACGAATTGGAGGAGGAAACTAACTTATCATTTGGTGAACTGATAGCCCTTGCAGATAGTAGATCTGCTAGGACTGAAGAAAAATCAAGTGGAACAATGGTTGGAAAATTCTCTGACCTAAAGCAGCTACAAGATTTGAATGAAAACCTTGATGGTGTTGGGGAGTGTTCTACTTTTGGCGAGGGTAACTTATCAAGTGTGGGAATAAGTAAAATGGGGGAGAAAAAACGGACCAAAGCAGATAAAACTATCACTCTGCAAGTTCTACGGCAATATTTCTCTGGAAGCCTAAAAGATGCCGCAAAGAACATTGGTGTTTGTACCACAACTTTGAAAAGGATCTGCCGGCAACATGGGATCAAGCGTTGGCCTTCTCGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCGGTTCAAGGTGCCTCTGGTGCATTTCAAATAGATTCCTTCTACTCAAACTTCCCGGACCTAGCTTCTCCAAATTTATCAGGAACCGGCCTATTATCAACCTTGAAGCAAAGTGACAATCCAAACTCATTAAGCACAACACAGCCTAATCTTGCTGGCTCATTGACACCTGAAGATGCATCAAAATCTCGTTCTTCGTCGTGCAGTCAGAATTCTATTTCCAGCCATCCTTGTTCCAGCATGTCAGAGCAACAACATCAAACAATTAACGTTGTTGATGATAACAAAGATCTTGTAGTAGTTGGAGAAGATTATACTGATGTTTTATTGAAGAGGAATAGAAGTGAAGCAGAACTAAAAAGGCTGAGTCAACAAGATAATAAAGCAAAGCTATTTCCAAGATCACTAAGCCAGGAAACACTTGTTGAACAACACCCAAAAACCAACAGCATCATGGCACCTAAAAAGGATGACTTTCATAGAGTAAAAGTGACATATGGAGATGAGAAAACGCGGTTCCGGATGCTGAAGACTTGGGCTTATGAAGATCTCTTGCACGAAATTTGTAGTAGATTTAACATAAGTGACATGAGCAAATATGATGTCAAGTATTTGGATGATGACTGTGAATGGATTTTACTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATTGTTGTCAATCTTCTGAGTGCAGCACCATCAAACTTTCTCTGCAAGTTTCCGATCTTCGTATGAGAAGTTCTTTAGAGTTTACATAG 2601 0.4083 MNFSSMDDDDAVSAPGTTILDDGTISMDFDYIDELFFDGCWFETTAEGSDFPPFDSSFSWCALEEQHESQEAFFDDVKVDDVSSNQQYESEIQSFEGTSEGVTRWWIAPTPNNPGPGYSVMEKLMMALNCIQDLNRSKDMLIQIWVPVNRGGKQILTTNDLQFCLGTNSTNLAKYREISMRYQFSTEEEDSKGLVPGLPGRVFREKVPEWTPDVRFFRSDEYPRVDHAQEYEVRGTLALPIFEQGSRTCLGVIEVVMTSSQINYRSELESVCKALEGVDLRSSKLSSTQNVKACNKSYEAVLPEIKEVLRVACEMHKLPLAQTWIPCIQQGKEGCRHSEDNYLHCISPVEHACYVNDAPIRAFHDTCSEHHLLKGQGVAGGAFMTNQPCFSSDITSLRKTDYPLSHHARIFGLQGAVAIRLRSIYSSTDDYVLEFFLPVNCNDSEEQKKMLTSLSMIIQSVCHSLRVITDNELEEETNLSFGELIALADSRSARTEEKSSGTMVGKFSDLKQLQDLNENLDGVGECSTFGEGNLSSVGISKMGEKKRTKADKTITLQVLRQYFSGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPDLASPNLSGTGLLSTLKQSDNPNSLSTTQPNLAGSLTPEDASKSRSSSCSQNSISSHPCSSMSEQQHQTINVVDDNKDLVVVGEDYTDVLLKRNRSEAELKRLSQQDNKAKLFPRSLSQETLVEQHPKTNSIMAPKKDDFHRVKVTYGDEKTRFRMLKTWAYEDLLHEICSRFNISDMSKYDVKYLDDDCEWILLTCDADLEECIDCCQSSECSTIKLSLQVSDLRMRSSLEFT* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1233 866 Pfam RWP-RK domain 553 601 IPR003035 -
Lan15g1233 866 SMART PB1_new 772 855 IPR000270 GO:0005515
Lan15g1233 866 Gene3D - 157 276 IPR029016 -
Lan15g1233 866 SUPERFAMILY CAD & PB1 domains 762 853 - -
Lan15g1233 866 CDD PB1_NLP 773 853 IPR034891 -
Lan15g1233 866 PANTHER PROTEIN NLP8 68 862 IPR045012 GO:0003700
Lan15g1233 866 Gene3D - 773 855 - -
Lan15g1233 866 ProSiteProfiles RWP-RK domain profile. 535 621 IPR003035 -
Lan15g1233 866 ProSiteProfiles PB1 domain profile. 772 855 IPR000270 GO:0005515
Lan15g1233 866 MobiDBLite consensus disorder prediction 645 698 - -
Lan15g1233 866 PANTHER PROTEIN NLP4 68 862 - -
Lan15g1233 866 Coils Coil 718 738 - -
Lan15g1233 866 Pfam PB1 domain 773 854 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1233 Lan-Chr15 20668043 20672507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1233 18 855 NLP Transcription Factor Family AT1G20640 48.347 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan15g1233 PB1 2.3e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1233 - - lang:109328153 1707.58