Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1225 ATGTCCATGGTGGAGAGAAGAAGCATGGGCCATAGGGGTGAGGAAGATAACCACTACCCTCCTCCACTTGCCTCTCACGAGGACTTAGTGAAGGACCCCAATGTCTTTTGGGACACTCTTAGGCGTTTTCATTTTCTTATGGCTACCAAATTTATGATTCCTGTGATCGGAGGAAAGGAGCTGGATTTGCACGTTCTTTACGTTGAGGTTACTAGAAGATGTGGCTATCAAAAGGTGGTTGCTGAGAAGAAATGGAGGGAAGTGGGTAACGTGTTCAATTTCTCAGCTACCACTACTAGTGCTTCTTTTGTGCTGAGGAAACACTATCTCACTCTCCTTTATCATTATGAACAAGTTCATTTCTTCAAACTTCAGGATGCAGCTTCTGCAAGCAACCATTCCTGGAGACCTGACTTAGCTATCGTTCAATACTCGCCTAAGCCAATCGAAGATCATCTTGATTCCAATGCTGAAGATTCTTCATTTATTTTTGGGGAAGGAACCATCGATGGAAAATTTGAATGTGGTTATTTAGTGTCTGTGAAACTGGGTTGTGAGGTTCTGAGAGGGGTGCTTTATCATCCAGACCCATCAGTTCCTCCGCCACAGGTTCAGCAATATGAGAATGCCATTGTACCATTCAGTAACAACAACAAACCTGGAAGTTCTGGTAGAAGAAGAAAAAACAAAAGAAGGTGGGACCCCAACTACCCAAAGCCCAATAGGAGTGGCTATAACTTCTACTTTGCTGAGAAGCATTACAAGCTCAAAGAACTTTACCCAAATAGAGAAAGGGAATTTACCAAAATGATTGGCCAGTCTTGGAATTGTCTTAGCTCTGAAGAAAGAATGGTTTACCAGAACATTGGCTTAAAGGACAAAGAGAGGTACAAGAGAGAAGTGAAGGAGTACAAAGAGAAAATGATGGTTGGACAGACAGAAACTAAACGTCCATAA 957 0.4242 MSMVERRSMGHRGEEDNHYPPPLASHEDLVKDPNVFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRCGYQKVVAEKKWREVGNVFNFSATTTSASFVLRKHYLTLLYHYEQVHFFKLQDAASASNHSWRPDLAIVQYSPKPIEDHLDSNAEDSSFIFGEGTIDGKFECGYLVSVKLGCEVLRGVLYHPDPSVPPPQVQQYENAIVPFSNNNKPGSSGRRRKNKRRWDPNYPKPNRSGYNFYFAEKHYKLKELYPNREREFTKMIGQSWNCLSSEERMVYQNIGLKDKERYKREVKEYKEKMMVGQTETKRP* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1225 318 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Lan15g1225 318 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
Lan15g1225 318 Gene3D High mobility group box domain 221 317 IPR036910 -
Lan15g1225 318 MobiDBLite consensus disorder prediction 1 25 - -
Lan15g1225 318 CDD HMGB-UBF_HMG-box 238 302 - -
Lan15g1225 318 MobiDBLite consensus disorder prediction 211 238 - -
Lan15g1225 318 Gene3D - 23 136 IPR036431 GO:0003677
Lan15g1225 318 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 315 - -
Lan15g1225 318 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Lan15g1225 318 Pfam ARID/BRIGHT DNA binding domain 36 117 IPR001606 GO:0003677
Lan15g1225 318 Coils Coil 294 314 - -
Lan15g1225 318 SMART hmgende2 237 306 IPR009071 -
Lan15g1225 318 SMART bright_3 31 122 IPR001606 GO:0003677
Lan15g1225 318 SMART ARID_2 27 117 - -
Lan15g1225 318 MobiDBLite consensus disorder prediction 1 22 - -
Lan15g1225 318 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Lan15g1225 318 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Lan15g1225 318 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 315 - -
Lan15g1225 318 SUPERFAMILY HMG-box 235 308 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1225 Lan-Chr15 20628185 20630460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1225 19 308 ARID Transcription Factor Family AT1G76110 63.455 3.26e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan15g1225 ARID 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1225 - - gmx:100784746 459.144