Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1211 ATGTCTACTTCCGGCGACGATCACCGTCCACATCAATTCAAATTTGAACTGTTAAATCCTCATTCTCACGTTCAAAATAATCCTATTCCTATTTTCTCTTCCCTTCATCTTCATCCTCATTTATCACCCCTCACCTTGAACCAAAAATATGAAGTCAGTAATTTCATGCCTCAGACAAGTACTACTGAAGCATCTCCTACCTTGAGCAGAACAGTTAATCTTCCTCCACTTCAAACCGAACCCGTCATCGGAGGAAAGCATCAAAATAAATCCAAAGTTTCACGAAAATCTGGGATTAACAAATCAAATATAGAATCTCCTAATTTGGCTGCAGTTAGCAATTGTCGTTATGACAGTTCCTTAGGATTGTTGACGAAGAAATTTGTCAGCTTGATCCACGAGGCTAAGGATGCTACCTTGGATCTAAATAAATCCACTGAGATCTTGCAGGTCCAAAAAAGGAGGATTTATGACATTACAAATGTTCTTGAAGGAATAGGGTTGATTGAGAAAACTTCAAAGAACCATATACGGTGGAAGGCATATGATGGATATGGGCAACACGATCTGGATGATCAAGTTACTAGACTAAAGGCTGAGGTTGAAAGTCTATATGCTGAGGAATTCAACCTTGATGAATGTATAAGAAAAAATCAAGAGCTTCTAAGAAACCTGCAGGAAAGAAAAAACTCTCAAAAATACCTTTTCGTTACCAAGGAAGATATTCTTAACCTTCCATGCTTCCAGGATCAAGAACTTATTGCAATCAAGGCTCCACAAGCTAGCTTCATTGAGGTCCCTGATCCAGACGAGGAATTCGGTTTCCGACAAAAGCAGTACAAAATGACTGTTAGAAGTGCAACTGGACCGATATCTTTGCACCTCTTGAGCAAGCGGAAAAGCAACTTTGAGGATAGCAGTATCAAGCAGGTTCAATTAATAGATCAACCATGGAATAGTGACCACTGCAGAATGAGGAGCGTGGGACTATTAGAAGGCCAGGATGATCAACAAAATGCTCCTCAAAGTTACCAATCTTTGAGCTCAGAGGAATTTGAAATTCAAGAAATTACTCCTCGGGATTGTGAAGTCGAAGATGACTATTGGTTTCAAACAGATCCTGGAGTGAGCCTAACAGATTTGTGGGGTGGCAGTAACTTCTAA 1164 0.3995 MSTSGDDHRPHQFKFELLNPHSHVQNNPIPIFSSLHLHPHLSPLTLNQKYEVSNFMPQTSTTEASPTLSRTVNLPPLQTEPVIGGKHQNKSKVSRKSGINKSNIESPNLAAVSNCRYDSSLGLLTKKFVSLIHEAKDATLDLNKSTEILQVQKRRIYDITNVLEGIGLIEKTSKNHIRWKAYDGYGQHDLDDQVTRLKAEVESLYAEEFNLDECIRKNQELLRNLQERKNSQKYLFVTKEDILNLPCFQDQELIAIKAPQASFIEVPDPDEEFGFRQKQYKMTVRSATGPISLHLLSKRKSNFEDSSIKQVQLIDQPWNSDHCRMRSVGLLEGQDDQQNAPQSYQSLSSEEFEIQEITPRDCEVEDDYWFQTDPGVSLTDLWGGSNF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1211 387 SUPERFAMILY E2F-DP heterodimerization region 192 298 IPR037241 -
Lan15g1211 387 SMART E2F_TDP_2 116 181 IPR003316 GO:0005667|GO:0006355
Lan15g1211 387 Gene3D - 111 183 IPR036388 -
Lan15g1211 387 Coils Coil 211 231 - -
Lan15g1211 387 PANTHER TRANSCRIPTION FACTOR E2FC 36 383 - -
Lan15g1211 387 Pfam E2F/DP family winged-helix DNA-binding domain 118 180 IPR003316 GO:0005667|GO:0006355
Lan15g1211 387 Coils Coil 187 207 - -
Lan15g1211 387 SUPERFAMILY "Winged helix" DNA-binding domain 116 179 IPR036390 -
Lan15g1211 387 PANTHER TRANSCRIPTION FACTOR E2F 36 383 IPR015633 GO:0000978|GO:0006357
Lan15g1211 387 Gene3D - 188 299 - -
Lan15g1211 387 MobiDBLite consensus disorder prediction 59 100 - -
Lan15g1211 387 MobiDBLite consensus disorder prediction 59 76 - -
Lan15g1211 387 Pfam E2F transcription factor CC-MB domain 197 296 IPR032198 GO:0046983
Lan15g1211 387 CDD E2F_DD 192 299 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1211 Lan-Chr15 20547910 20552121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1211 63 387 E2F-DP Transcription Factor Family AT1G47870 49.080 2.34e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan15g1211 E2F_CC-MB 4.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1211 K06620 - gmx:100797301 441.81