Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1180 ATGACAGAAACAGATAATCCTTTACCTTCATCAATGGCAGCTTCAGCAGAAGCTAGCTTCTCATCTTCTCCATTAAACAGCGCGTCCCAACCACCGCCTAAAAAGAAGCGTAACCTTCCCGGAATGCCTGATCCAGATGCTGAGGTAATTGCTTTGTCGCCGACAACACTAATGGCGACGAACCGTTTTGTGTGTGAGATCTGCAACAAAGGATTCCAACGAGAACAGAACTTGCAGCTTCATCGGAGAGGACATAACTTACCGTGGAAGCTGCGGCAGCGATCAGGAAATGAAGTTCGGAAGAAAGTATACGTGTGTCCAGAACCGTCGTGCGTGCACCACCACGCGTCTAGAGCGCTTGGTGATCTCACCGGAATAAAGAAGCACTTTAGCAGAAAACACGGAGAGAAGAAGTGGAAATGCGAACGTTGCTCTAAGAAATATGCCGTACAATCTGATTGGAAAGCTCATATCAAAACTTGTGGAACTAAAGAGTATAAATGTGACTGTGGAACCTTCTTCTCTAGGAGGGATAGCTTCGTAACGCACAGAGCTTTTTGTGATGCATTAGCGGAAGAGGCTAGAGCACAAACCCTAACCGCCGTTAGCAAGGATGGTGTTGTGGCTTCTTCGCCGCCGCCGCCGCCGCTTACACCGTCCACCTCTGTGCTCTCTCCAACTTTGTCGATTCAAAGCTCAGAAATTCCAGAAAACCCAAAAAGGATGTCACCGCCGCCGTCAAACGCCGTGGACACCGGCAACATTTCCATTGTTATGGCATCCTCAACCACACCAGTTCCATCATCATTTTCCAATCTCTTCTCAAGCATTTCAGCTCAAGAACGCACATCCCTCTCCCTCTCAACATCATCAATCTTTGACTCAACATCCCTATTCCATGATCCACACCACACTACTACTGCAACAGTTGCGTCTCCACAACCTGCATTGTCTGCAACTGCATTACTCCAAAAGGCAGCACAAATGGGTGCAGCTTCATCCAATGCATCACTCTTTCATGCTTTAGGCCTATCAACATCATCATCTAACTCTGGCCAAGATCACATCACAACACTGCCATGGAATACCCTAATCCATATAAAGCAAGAGGAGATAAATCACACTCTGCCACATAACTTGGGTCTCGGACTAACCTCTGGGAATAGTAATGCAGGTTTTGCAGATGCAATGATGCGGTCTTCATCTGACCCATTTGGTGGTCCCGGTCAACCCACCATGACCCGTGATCTTCTTGGTCTAAGCATTGGTAATGGGACTAGTATTCCTTCTTTCTTCACCTCTTTTGGAGGGAACTTCCAAGCATCAGGGGATAGAGGAGGAGGAGGACCTGGCCAGTAG 1359 0.4768 MTETDNPLPSSMAASAEASFSSSPLNSASQPPPKKKRNLPGMPDPDAEVIALSPTTLMATNRFVCEICNKGFQREQNLQLHRRGHNLPWKLRQRSGNEVRKKVYVCPEPSCVHHHASRALGDLTGIKKHFSRKHGEKKWKCERCSKKYAVQSDWKAHIKTCGTKEYKCDCGTFFSRRDSFVTHRAFCDALAEEARAQTLTAVSKDGVVASSPPPPPLTPSTSVLSPTLSIQSSEIPENPKRMSPPPSNAVDTGNISIVMASSTTPVPSSFSNLFSSISAQERTSLSLSTSSIFDSTSLFHDPHHTTTATVASPQPALSATALLQKAAQMGAASSNASLFHALGLSTSSSNSGQDHITTLPWNTLIHIKQEEINHTLPHNLGLGLTSGNSNAGFADAMMRSSSDPFGGPGQPTMTRDLLGLSIGNGTSIPSFFTSFGGNFQASGDRGGGGPGQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1180 452 MobiDBLite consensus disorder prediction 205 226 - -
Lan15g1180 452 MobiDBLite consensus disorder prediction 1 47 - -
Lan15g1180 452 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lan15g1180 452 MobiDBLite consensus disorder prediction 1 33 - -
Lan15g1180 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 444 - -
Lan15g1180 452 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Lan15g1180 452 Gene3D Classic Zinc Finger 96 187 - -
Lan15g1180 452 Gene3D Classic Zinc Finger 59 86 - -
Lan15g1180 452 SMART c2h2final6 104 134 IPR013087 -
Lan15g1180 452 SMART c2h2final6 63 85 IPR013087 -
Lan15g1180 452 SMART c2h2final6 139 159 IPR013087 -
Lan15g1180 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Lan15g1180 452 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 14 444 - -
Lan15g1180 452 MobiDBLite consensus disorder prediction 233 252 - -
Lan15g1180 452 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1180 Lan-Chr15 20382736 20385773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1180 8 425 IDZ Gene Family AT3G50700 52.252 5.68e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan15g1180 zf-C2H2_jaz 4.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1180 K25869 - lang:109339499 620.542