Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1159 ATGGTGGCAGCATACGAGGAAAGTCGTCAGAAAAGGTTGGAAGAGAACAAGAAAAGAATGGAGGCACTTAATCTTCATCAGCTTTCTCAATCCTTACATAAGTCCCCTTCTCCTAAACCCTCACCTGCCAAATTTCGCATCACTCCTAAACCCAAATCCAAACACCTTCTTGTTCCAAGGAGATCCACCCGTGTTGCCAATCTCCCCACTCCTCTTTACAAAGAAGTTGTTGTTGATCGCGTCACAATACCCAGAAGAAGTTACAATAGGCACAGAGATTATTCGAAGCGGGTTTATGCTTCTGATGAAGCTAGAGAAGAAGCCTTAGAGAAAGCGAACAAGTTAGAGTCTGATTTAGGTTCTCATTGTCCTACCTTTGTTAAAACAATGCTCCAATCTCATGTCAGCGGTGGATTCTGGCTCGGACTTCCAGTTCACTTCTGCAAGGGAAACCTACCTAAAGGGGATGAAGTAATGAATTTGATTGATGAGGATGGGAATGAGTATCCAACAATTTATTTGGCTCGAAAAACTGGACTCAGTGGTGGATGGAAAGGTTTTGCGGTTGCTCATGACCTAGCAGATGGGGATGCTTTAGTTTTTCAACTAATCAAGCGCACTACATTCAAGGTCTACATTATTAGGGTGAATGGTCCTGCAGAGGAGGAGGGTTAG 675 0.437 MVAAYEESRQKRLEENKKRMEALNLHQLSQSLHKSPSPKPSPAKFRITPKPKSKHLLVPRRSTRVANLPTPLYKEVVVDRVTIPRRSYNRHRDYSKRVYASDEAREEALEKANKLESDLGSHCPTFVKTMLQSHVSGGFWLGLPVHFCKGNLPKGDEVMNLIDEDGNEYPTIYLARKTGLSGGWKGFAVAHDLADGDALVFQLIKRTTFKVYIIRVNGPAEEEG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1159 224 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 219 IPR044837 -
Lan15g1159 224 MobiDBLite consensus disorder prediction 1 51 - -
Lan15g1159 224 MobiDBLite consensus disorder prediction 23 37 - -
Lan15g1159 224 SMART B3_2 126 217 IPR003340 GO:0003677
Lan15g1159 224 ProSiteProfiles B3 DNA-binding domain profile. 126 217 IPR003340 GO:0003677
Lan15g1159 224 SUPERFAMILY DNA-binding pseudobarrel domain 120 217 IPR015300 -
Lan15g1159 224 MobiDBLite consensus disorder prediction 7 22 - -
Lan15g1159 224 Pfam B3 DNA binding domain 126 215 IPR003340 GO:0003677
Lan15g1159 224 Gene3D - 100 218 IPR015300 -
Lan15g1159 224 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 3 219 - -
Lan15g1159 224 CDD B3_DNA 124 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1159 Lan-Chr15 20251632 20254811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1159 51 221 B3 DNA Binding Superfamily AT5G42700 59.064 1.32e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan15g1159 B3 1.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1159 - - gmx:100797091 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1159 15 20251632 20254811 Lan3g1222 3 24404780 24407709 LSH