Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1151 ATGGCTATGGAAGCTCTCAAATCACCCACCTTCGCCGCCACCACCGAAGACAATCTTCACTACCTAGAATCAGCACCATGGGCTAAGAGAAAGCGTTCAAAGCGTAGCCGCATGGACCACCACCACCACCACCACCGTTCGTGTACTGAGGAGGAGTACCTTGCTCTTTGCCTCATCATGCTCTCTGCTGATAAGACTCACACTATTCCTGCTCCATCACCACCGCTAGCTACAGAAGAGTCCAAGTTGAGTTACAAATGCTCCGTTTGCAACAAAGCCTTCCCTTCATACCAAGCACTCGGTGGACACAAAGCTAGCCACCGTAAACTCGCTGGAGCCAACGGCGGTGAAGATCAGCCAACCTCCTCCGCCGTCACCACCACTTCTGCCACCACCGCATCTAGTAAAGGAGGAAACAAGACACACGAGTGTTCAATCTGTCACAAGTCCTTCCCCACTGGACAAGCTTTAGGAGGACATAAGCGTTGCCACTATGACGGTGGTGCCGGTAACAGCAGCGTTGTCACCGCCTCTGAAGGTGTGGGGTCCACACACACCGTGAGTCATAGCCACCAGCGTGACTTTGATCTTAATCTTCCTGCTTTTCCAGATTTTCCAACAAAGTTCTTGGTGGAGGATGAAGTTTCAAGCCCTCACCCTTTGAAAAAGCCTCGTCTTTTAACCATTCCCAGCATTCAAATTTCTCAATTCTAA 714 0.507 MAMEALKSPTFAATTEDNLHYLESAPWAKRKRSKRSRMDHHHHHHRSCTEEEYLALCLIMLSADKTHTIPAPSPPLATEESKLSYKCSVCNKAFPSYQALGGHKASHRKLAGANGGEDQPTSSAVTTTSATTASSKGGNKTHECSICHKSFPTGQALGGHKRCHYDGGAGNSSVVTASEGVGSTHTVSHSHQRDFDLNLPAFPDFPTKFLVEDEVSSPHPLKKPRLLTIPSIQISQF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1151 237 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Lan15g1151 237 Gene3D Classic Zinc Finger 82 164 - -
Lan15g1151 237 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lan15g1151 237 SMART c2h2final6 142 164 IPR013087 -
Lan15g1151 237 SMART c2h2final6 85 107 IPR013087 -
Lan15g1151 237 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 229 IPR044653 GO:0003700
Lan15g1151 237 MobiDBLite consensus disorder prediction 108 140 - -
Lan15g1151 237 Pfam C2H2-type zinc finger 142 166 - -
Lan15g1151 237 Pfam C2H2-type zinc finger 85 109 - -
Lan15g1151 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lan15g1151 237 PANTHER ZINC FINGER PROTEIN ZAT10 1 229 - -
Lan15g1151 237 MobiDBLite consensus disorder prediction 116 140 - -
Lan15g1151 237 SUPERFAMILY beta-beta-alpha zinc fingers 85 164 IPR036236 -
Lan15g1151 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1151 Lan-Chr15 20200564 20201579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1151 1 226 C2H2 Transcription Factor Family AT1G27730 55.085 3.89e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan15g1151 zf-C2H2_6 8.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1151 - - aip:107606374 270.396