Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1135 ATGCAAAGAGGTGCACTTGGTTCCATGCCTGAAACAATTGATTTTCATAGTAGTTCTACATCAAGTAATGCTACTATGGATCAGCAGATTTTCTGGAATAATGTGCAGAATACTGCTGAAAATCAAATGCCTGAATATATCCTTTCTCCCAGTGATATTAACTCAGTTTATGTCAATTCTATAAACCATGAATGGCAAAATTTAAGTGAATGGAACCTAGGTGAGCCTAGTTCCAGTAATACACCGAATGAGATTAACAGTAATGAACAGAAAAGAGAGCTTGGATGGTCTTCACCATTGAATGCTGGTGCATTATCTGATCCAAGGCTAGAAGAAAGGCACCTTGAACCAACCAATGCTCTTTCGCTGGATAATGTCAATACAGGTCCCATATATATGTGTAGCTCCAATTCTCATTTAATCTCCCGGAATCTCAACTCAAATTCAGATATAGCAGATAATGGCAGCGATAATAGTCAACATCTGGATCAGCCTAACTTGCCCAAGTCTAGTAGATCAGTGAATGAACATATTCCACCTAGTAATGGCTTTTTGGCAGAAGATACAGACGGCAGGCCAGGTTGTTCTCTAGACACTCGTCGTGTATCTTGTAAAAGAAAGGCTGTTGAAGGAAATGCTGGACAATCTTCAGACGTTGGAAATTCTAGCTACACTCAGCATGGGGATGGTAGTGCTTGGCACCCTTTTCCCACCCAGGATAACGCTCAGAACAGTTTAAGGATGGCTATTTCAGCAGAACAGCTAAACGCAAGACTTGGCTTAGGCATGGGGGATGGAGCCTCTGAAAGTGTTCCCGGTTCATATGTTGCAGGAAGCTCAGAGAGTTTGCACAGGAATTTTCGTTTGAGGATAAATCCTTCAAACCCACAAAATTCCGTTCCTCCTGCTGCATTTATAGCTGAGAATGTGATTAGGCATTCTGGTGCTTTATCCTCTTCGACATCACAAAGGTTTCATTCTGTTGATAGTTCTCTGTACTTGAGGACAGCACCGCCGATTGATAATGTGATTCCTCCAAGCCAGCCACCTGTAATCCAGGCTCCTGCGTTGCCAAGGAATAGGCAATCATATAGATGGAATGGTGGTTCTAGTTCAAGAAACATCCTTTCATCAAACTCAATTATATGTCCAGACTGGGATAATCTACCACAAGAGGGTGCAAGCTTTGGAAGTATGTCTAGAAATGCTGTAGAACACCCAGTGTTTACACCTGCAACTGATTTAAGAAATTTGGCTCAACACCCAGCAATTAGAGGTTCAAGTTCAAGTATTGCAAATTTAAGCATTCCCGGGAATGTTGCTTCTTCTTCGCCAACTGCATTGAATTCAGCTACCAATCCTTCATCTGCTTCAACCTGGGCTTCGCGTCCTAATCCTCCACAGCATCCCCGAAGGTCATCTGACTATGTCCGTCGGTCCTTGTTTCCTCCTGCTTCTGAGGCTACTGGAGGTCCAAGCAGTAACCCTTCTTCCTTGCGCCCTGGTCCTTTTACATCTGAGCCGAGGGTGCTATCATCTGGGGCAAACCCGAGATCAGCTTTGTGGTTAGAAAGGCGAGGAGGTGATAGTGAGTTTGGAATACCCCCTTCTTTACGAACTCTGGCTGTCGCAAGTGAAGGAAGTAGTAGAATTGTATCCGAGCTCCGCAATGCTTTGGGTCGTATACGTCGGGCTAGGAACCTCCAATTTGAGGATGTTATGATCCTTGACCAATCAGTATTTTCTAGAAGGGCTGATATTCACGACAGACACCGGGATATGCGACTTGATGTAGATAACATGTCTTATGAGGAGTTATTAGCTTTGGAAGAGCGCATTGGAAATGTAAGTACTGGATTGAGTGAGGAAACCATATTGAAACTTTTGAAACAGAAAAAGTATGTAGCTGAAACAGGATCTCAGCTAGATGCAGAACCCTGTTGTGTTTGTCAGGAAAATTATGGTGATGGAGATGATATTGGTACACTCAATTGTGGGCACGATTTCCATAGCAACTGTATTAAACAGTGGCTGATGCATAAGAATATGTGCCCTATTTGTAAGACAACAGGCTTAGCAACATGA 2085 0.4317 MQRGALGSMPETIDFHSSSTSSNATMDQQIFWNNVQNTAENQMPEYILSPSDINSVYVNSINHEWQNLSEWNLGEPSSSNTPNEINSNEQKRELGWSSPLNAGALSDPRLEERHLEPTNALSLDNVNTGPIYMCSSNSHLISRNLNSNSDIADNGSDNSQHLDQPNLPKSSRSVNEHIPPSNGFLAEDTDGRPGCSLDTRRVSCKRKAVEGNAGQSSDVGNSSYTQHGDGSAWHPFPTQDNAQNSLRMAISAEQLNARLGLGMGDGASESVPGSYVAGSSESLHRNFRLRINPSNPQNSVPPAAFIAENVIRHSGALSSSTSQRFHSVDSSLYLRTAPPIDNVIPPSQPPVIQAPALPRNRQSYRWNGGSSSRNILSSNSIICPDWDNLPQEGASFGSMSRNAVEHPVFTPATDLRNLAQHPAIRGSSSSIANLSIPGNVASSSPTALNSATNPSSASTWASRPNPPQHPRRSSDYVRRSLFPPASEATGGPSSNPSSLRPGPFTSEPRVLSSGANPRSALWLERRGGDSEFGIPPSLRTLAVASEGSSRIVSELRNALGRIRRARNLQFEDVMILDQSVFSRRADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQKKYVAETGSQLDAEPCCVCQENYGDGDDIGTLNCGHDFHSNCIKQWLMHKNMCPICKTTGLAT* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1135 694 MobiDBLite consensus disorder prediction 440 514 - -
Lan15g1135 694 SUPERFAMILY RING/U-box 646 690 - -
Lan15g1135 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 691 IPR013083 -
Lan15g1135 694 CDD RING-H2_TTC3 646 688 - -
Lan15g1135 694 MobiDBLite consensus disorder prediction 487 502 - -
Lan15g1135 694 Pfam Ring finger domain 647 688 IPR001841 -
Lan15g1135 694 MobiDBLite consensus disorder prediction 72 104 - -
Lan15g1135 694 SMART ring_2 647 687 IPR001841 -
Lan15g1135 694 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 693 IPR045191 GO:0061630
Lan15g1135 694 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 4 693 - -
Lan15g1135 694 MobiDBLite consensus disorder prediction 1 21 - -
Lan15g1135 694 MobiDBLite consensus disorder prediction 145 178 - -
Lan15g1135 694 MobiDBLite consensus disorder prediction 214 229 - -
Lan15g1135 694 MobiDBLite consensus disorder prediction 440 469 - -
Lan15g1135 694 MobiDBLite consensus disorder prediction 72 95 - -
Lan15g1135 694 MobiDBLite consensus disorder prediction 193 207 - -
Lan15g1135 694 MobiDBLite consensus disorder prediction 145 240 - -
Lan15g1135 694 ProSiteProfiles Zinc finger RING-type profile. 647 688 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1135 Lan-Chr15 20098812 20104591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1135 203 694 C3H Transcription Factor Family AT2G15530 35.795 4.60e-75 254