Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1123 ATGAATTTCAACATGGATTCTGATAAAGCGAAGCTGTTCGTAGGGGGAATTTCTCGGGAGACTACCAACGATATTCTGAGAGACCACTTCGTCAAGTACGGCATCGTTTTGGATTCCGCGATTTCAGTAGACCGCATCACTCGAAACCCTAGAGGTTTTGGCTTTGTTACATTCTCTGATCTCTCTGAAGCTGAAAAGGCTCTTCAGGACAGCCACGTTATTCTTGGAAGAACGGTAGAAGTGAAAAAAGCAATACCCAGAAGTGAACAGCAACACCAAAATCAAATACAGAATAGAGGGGTGAGTAACTATAGCAGTATTAATGACTGTAGCTGTGACCAGTTTAGGACGAAAAAGATATTTGTAGGAGGTTTATCTGCTGGTATATCCGAGGAAGAGTTTAAAAGTTACTTCGAGAGGTTTGGTCGTATAACGGATGTAGTGGTGATGCAGGACAGTGTAACTCACCGGCCTAGGGGGTTTGGGTTCATCACTTTTGATTCAGAAGAATCAGTTGAAAATGTTGTGGTGCAAAGTTTTTATGACTTGAATGGTAGACAGGTAGAGGTCAAGAGGGCTGTACCAAAAGAGGGGAACTATGGCGGTGATGGTTTTAACAAATCAAGATATAATAAGAGTGAAAGAGGAGCCTATCAAAGTTATCCTCCTTTTAGTCCTAGGTACATGTCCCCTGGCTTTGCACCTTTGCCCTATTATACTAGTGGTGGTGTTTATGCCTATGGATCAAACCCCTATGATTATTGCTACACTATGGGTGGGTATGGAGGAAATGGATTTGCAGTTCCATCTGATGCTTCTAGAAACTTTTGGTATGGGCCCATGGTAGCCAATCCTCAAGCATATCAGTTGCCTTATACCAATGGCCCTCCAAGTGTAGCATATGCGGGTGGTAGGGTTGGAATAGCCAGTGGTCCTGCAACCCGGGGATATAATGGTTTTGTTCCAGACTATGTGACGTCACCTCAAAGTTACAAGCGCAGTGCCGATTCTTCAAGATTCAGGGGAAGCAATGGAGACATTTCTAGTTAA 1050 0.4352 MNFNMDSDKAKLFVGGISRETTNDILRDHFVKYGIVLDSAISVDRITRNPRGFGFVTFSDLSEAEKALQDSHVILGRTVEVKKAIPRSEQQHQNQIQNRGVSNYSSINDCSCDQFRTKKIFVGGLSAGISEEEFKSYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVENVVVQSFYDLNGRQVEVKRAVPKEGNYGGDGFNKSRYNKSERGAYQSYPPFSPRYMSPGFAPLPYYTSGGVYAYGSNPYDYCYTMGGYGGNGFAVPSDASRNFWYGPMVANPQAYQLPYTNGPPSVAYAGGRVGIASGPATRGYNGFVPDYVTSPQSYKRSADSSRFRGSNGDISS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1123 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 177 IPR000504 GO:0003723
Lan15g1123 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Lan15g1123 349 Gene3D - 115 197 IPR012677 -
Lan15g1123 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Lan15g1123 349 SUPERFAMILY RNA-binding domain, RBD 6 102 IPR035979 GO:0003676
Lan15g1123 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Lan15g1123 349 SMART rrm1_1 11 82 IPR000504 GO:0003723
Lan15g1123 349 SMART rrm1_1 119 191 IPR000504 GO:0003723
Lan15g1123 349 MobiDBLite consensus disorder prediction 328 349 - -
Lan15g1123 349 SUPERFAMILY RNA-binding domain, RBD 116 216 IPR035979 GO:0003676
Lan15g1123 349 Gene3D - 2 97 IPR012677 -
Lan15g1123 349 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 319 - -
Lan15g1123 349 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1123 Lan-Chr15 20032286 20033890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1123 12 191 Eukaryotic Initiation Factors Gene Family AT4G34110 26.374 1.14e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1123 K14411 - gmx:100816822 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1123 15 20032286 20033890 Lan14g0868 14 15345783 15347472 LSH
Lan15g1123 15 20032286 20033890 Lan3g1167 3 23930867 23932489 LSH