Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1122 ATGAGTGGCTTTGAAAATGAGATGGGGCTTCAACATGAAAATGAGGGCATGCAAATTAGTTCTATGTCTCTGGCTAATCCATTTTTGATTGCTTCTTCTGATTGGGGTCCACTTGTTTCATTGAGTCAGGTTCAAACTTTTGGAGGCTCTCCTATGGTTTCTCATAGGTATCAGCCAAATTATGATCCGAGCAATGAAGCGGTAATAGAACCAGGATCTGCACCCAATGACAATAGCAGAAAAAGAGGCCATGACTATAACTCTACTTTAAATAAGAATGCTGCAGGGGATGCAATGAAAGGTTCTTTTGAGAATAACTCTAATGTTGTGAAAGAACAAGATGAAAAGAAATATAAAGTGGAGCTAAGTACTAGTACGCAATTGCGTGGTAAGCAATCGGTGAAGAAAAATAAAGACAACTCTCACAGTGAAGAAGATCCTAAAGAAAATTTTGTTCATCTGAGAGCTGGAAGAGGAAAAGCTACAAATAGTCATAGTCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGGTTTAGGTTTCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACAGGCAAAGCAGTAATGCTTGATGAGATTATAAACTACGTGCAATCATTGCAACAGCAGGTTGAGTTCTTGTCCATGAAACTTGTCACTGTGAACCCAGAACTGAATTTCGACGTAATAGAGCGAATCCTCTCCAAAGATTCACATGTTGAACATAATAGACATATTGGTGGATATGGTCCTACAAACAATTGTTCTAATCCATTCCCAACCATGTTGAGCACATCAACACAAATCCTTCCTTTGCCCCGGTCTGTTTTGGACCAAGAGTTTCATAGCTTATATGAAATGAGCTACAACTCTACTAATGTTCTTGACAATTTGGCACCTAATGAGACAAATAAAATACAAGTAATAATGCTTGGGATGAATCTTATTGTTTTGAACTAG 969 0.3829 MSGFENEMGLQHENEGMQISSMSLANPFLIASSDWGPLVSLSQVQTFGGSPMVSHRYQPNYDPSNEAVIEPGSAPNDNSRKRGHDYNSTLNKNAAGDAMKGSFENNSNVVKEQDEKKYKVELSTSTQLRGKQSVKKNKDNSHSEEDPKENFVHLRAGRGKATNSHSLAERVRREKISERFRFLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLVTVNPELNFDVIERILSKDSHVEHNRHIGGYGPTNNCSNPFPTMLSTSTQILPLPRSVLDQEFHSLYEMSYNSTNVLDNLAPNETNKIQVIMLGMNLIVLN* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1122 322 CDD bHLH_AtBPE_like 150 232 - -
Lan15g1122 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 228 IPR036638 GO:0046983
Lan15g1122 322 SMART finulus 166 216 IPR011598 GO:0046983
Lan15g1122 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Lan15g1122 322 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 308 IPR024097 GO:0006355
Lan15g1122 322 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 56 IPR024097 GO:0006355
Lan15g1122 322 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 71 308 - -
Lan15g1122 322 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 12 56 - -
Lan15g1122 322 MobiDBLite consensus disorder prediction 55 150 - -
Lan15g1122 322 Pfam Helix-loop-helix DNA-binding domain 163 211 IPR011598 GO:0046983
Lan15g1122 322 MobiDBLite consensus disorder prediction 88 108 - -
Lan15g1122 322 MobiDBLite consensus disorder prediction 132 150 - -
Lan15g1122 322 Gene3D - 157 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1122 Lan-Chr15 20025875 20028568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1122 64 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 49.388 1.60e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan15g1122 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1122 - - gmx:100794464 286.96