LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan15g1109	ATGTTTTCTGTGAATGAAATGAAGGGAATTAGTGTGAAAGAGGAATCAGAGACAGTAACAGTAACTGTAGCACCTGGTTCATCATCATCTTCATCTTCAAATCTCTCACCTCAACCCATGGAAGGGTTACATGAAATGGGTCCACCTCCATTTCTCACTAAAACCTTTGATGTTGTGGAAGATCCATCCACTGATTCCATTGTTTCATGGAGCATAAATCGCAACAGTTTCGTTGTTTGGGATTCTCACAAGTTTTCCACTTCTATCTTACCTCGTTACTTCAAGCATAACAATTTCTCTAGCTTCGTTCGCCAGCTCAATACCTATGGTTTTAGAAAAGTTGATCCAGATAGATGGGAATTTGCAAATGAAGGGTTTTTGGCAGGGCAGAGGCACTTATTGAAAACCATAAAGAGAAGAAGAAATGTGACACAGTCACAGGCACAAGGCATGATGCAAGGAAGTGATGTTTGTGTTGAATTGGGGGAATATGGACTAGAAGATGAGCTTAACAGATTGAAGAGGGATAGAACAGTTTTGATGACGGAAATCGTGAAGCTGAGGCAGCAACAACAGAATTCAAGGGAGCAATTGATTGCAATGGAGGCTAGATTGCAAAGCACTGAGAAGAAACAGCAACAGATGATGGCTTTCCTTGCCAAAGCAATGAGCAATCAATCTTTTATACAACAATTGGCACGAAGGAATGTTCAGAATAAATTGCAAGGTGGTGAGTTCAGTAGAAAGAGGAGACTTACTGCAAGGCCAAGTATGGTGAATTTGCAACAACAACATTCAGTGCCTATTGAGACAGTGGAGTATGCAACCCAACAAGAAGATGATTTAGCAACTATTGAGTCTGAGATGGAGTCATTTTTCTCAGCTGGTTATTATGATAATGAATCAAGCACTGAAATCAAAGAGCCAATAATGAATCATGCAGCTACTGGTGGGAGTGATTTGGGTTCAGTGAGTGATGCTATATGGGAAGATTTGCTGAATGAAGATTTGATTGGTGACTTTTCACAGATTGATGTGCCAGTGGAGGATTTGGTAGCACAGCCTGATGATTGGACTGAAGATTTGCAGAACCTTGTGGATCATATAGGTTCTCTTGGCTCCAAACCATAG	1131	0.4076	MFSVNEMKGISVKEESETVTVTVAPGSSSSSSSNLSPQPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSINRNSFVVWDSHKFSTSILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKTIKRRRNVTQSQAQGMMQGSDVCVELGEYGLEDELNRLKRDRTVLMTEIVKLRQQQQNSREQLIAMEARLQSTEKKQQQMMAFLAKAMSNQSFIQQLARRNVQNKLQGGEFSRKRRLTARPSMVNLQQQHSVPIETVEYATQQEDDLATIESEMESFFSAGYYDNESSTEIKEPIMNHAATGGSDLGSVSDAIWEDLLNEDLIGDFSQIDVPVEDLVAQPDDWTEDLQNLVDHIGSLGSKP*	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan15g1109	376	SMART	hsfneu3	47	140	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan15g1109	376	Gene3D	-	44	141	IPR036388	-
	Lan15g1109	376	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	29	344	IPR027725	-
	Lan15g1109	376	Coils	Coil	170	211	-	-
	Lan15g1109	376	ProSitePatterns	HSF-type DNA-binding domain signature.	90	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan15g1109	376	PRINTS	Heat shock factor (HSF) domain signature	51	74	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan15g1109	376	PRINTS	Heat shock factor (HSF) domain signature	89	101	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan15g1109	376	PRINTS	Heat shock factor (HSF) domain signature	102	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan15g1109	376	MobiDBLite	consensus disorder prediction	23	39	-	-
	Lan15g1109	376	MobiDBLite	consensus disorder prediction	23	44	-	-
	Lan15g1109	376	Pfam	HSF-type DNA-binding	51	140	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan15g1109	376	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	29	344	-	-
	Lan15g1109	376	SUPERFAMILY	"Winged helix" DNA-binding domain	47	140	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan15g1109	Lan-Chr15	19944174	19946540	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan15g1109	18	376	HSF	AT2G26150	52.066	2.49e-117	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lan15g1109		HSF_DNA-bind	4.9e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan15g1109	K09419		-	gmx:100794605	492.656