Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1097 ATGAGTTTGAGTAATGCAACAAAGGATGATTCTTCTTCCTCTGCTTCTTCAGAGATTCACATACCAGCAGAGATAGATTGGCACATGCTTGACAAGTCCAAGTTTTTCTTCCTAGGCGCCGCCTTATTCTCTGGTGTTTCAGCTGCTCTTTATCCTATGGTTGTGTTGAAGACACGTCAGCAATGTTCTTCAGCACAATACTCTTGTCTCAACATGTCTTGTGCCATTATGCGCTATGAAGGATTCAGAGGTTTTTACAAAGGTTTTGGAACTTCTTTGATGGGAACAATCCCTGCTCGCGCACTTTACATGGCTTCTCTTGAAGTTACCAAGAGTAGTGTTGGCACTGCTCTTCTTGATTTGGGGTTTTCAGATACCACTGCCACTGCTATAGCTAATGCTGCTGGTGGTGTCACTTCTGCTATGGCTGCACAATTGGTTTGGACACCAATTGATGTTGTGAGCCAAAGACTTATGGTTCAAGGCTGCAACAACAGCAGCAACACTAAAAATATACTAACTAATCTTAATTCTGAGAATTACAGGAATGGCTTTGATGCATTCAGGAAAATTCTTTGTGCTGATGGAGCAAGAGGGTTCTATAGGGGGTTTGGGATATCAATATTGACTTATGCACCATCCAATGCTGTTTGGTGGACTTCTTACTCTATGGTCCATAGGCTCATTTGGGGTGCTTTTGGTAGCTATATGAGTAAGAGGGATAATGGTGGTTTGGTCAATGGAGGGTGTGGTTTTAGGCCTGATTCTAAGGCAATAGTGGCTGTGCAAGGGTTGAGTGCTGTTATGGCAAGTGGGGTGTCAGCAATTGTGACAATGCCATTTGACACAATCAAGACAAGGTTGCAAGTGTTGGATAGTGAGGAAAATGGGAGAAGGAGGCCTTTAACTTTAGTGCAAACTGTGAAGAATTTGGTGAATGAAGGTGGCTTGCTTGCTTGCTACAGAGGATTGGGACCTAGGTGGGCTTCAATGTCAATGTCTGCAACAACCATGATTACAACCTATGAGTTTTTGAAACGAATGTCTACAAAGAGTCAAGAGTAA 1065 0.4291 MSLSNATKDDSSSSASSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQCSSAQYSCLNMSCAIMRYEGFRGFYKGFGTSLMGTIPARALYMASLEVTKSSVGTALLDLGFSDTTATAIANAAGGVTSAMAAQLVWTPIDVVSQRLMVQGCNNSSNTKNILTNLNSENYRNGFDAFRKILCADGARGFYRGFGISILTYAPSNAVWWTSYSMVHRLIWGAFGSYMSKRDNGGLVNGGCGFRPDSKAIVAVQGLSAVMASGVSAIVTMPFDTIKTRLQVLDSEENGRRRPLTLVQTVKNLVNEGGLLACYRGLGPRWASMSMSATTMITTYEFLKRMSTKSQE* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1097 354 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 5 354 - -
Lan15g1097 354 Pfam Mitochondrial carrier protein 262 352 IPR018108 -
Lan15g1097 354 Pfam Mitochondrial carrier protein 44 113 IPR018108 -
Lan15g1097 354 Pfam Mitochondrial carrier protein 129 230 IPR018108 -
Lan15g1097 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 258 348 IPR018108 -
Lan15g1097 354 PRINTS Mitochondrial carrier protein signature 40 53 IPR002067 GO:0055085
Lan15g1097 354 PRINTS Mitochondrial carrier protein signature 201 219 IPR002067 GO:0055085
Lan15g1097 354 PRINTS Mitochondrial carrier protein signature 267 289 IPR002067 GO:0055085
Lan15g1097 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 128 228 IPR018108 -
Lan15g1097 354 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 5 354 - -
Lan15g1097 354 Gene3D Mitochondrial carrier domain 233 354 IPR023395 -
Lan15g1097 354 Gene3D Mitochondrial carrier domain 26 231 IPR023395 -
Lan15g1097 354 SUPERFAMILY Mitochondrial carrier 28 345 IPR023395 -
Lan15g1097 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 31 113 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1097 Lan-Chr15 19891406 19893366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1097 18 354 Chloroplast and Mitochondria Gene Families AT5G26200 67.160 9.88e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1097 K15121 - gmx:100784202 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1097 15 19891406 19893366 Lan14g0849 14 15188557 15190383 LSH
Lan15g1097 15 19891406 19893366 Lan3g1136 3 23688032 23689425 LSH