Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1080 ATGGGTGGTAATGGTAGAGTTGAAGTTGTGAGTGTGAAAGGGTGTTCAAGGCTCTTTTCATCTTCATTCAGAGGCTTGCAATCAATGGAGCCAATGTCTCCTGCTTCATCCTCTATGGCTTCTGAACAAGTGCACGTGAGATCACGTGCTCCTTTTGCTGGTCTTGTTATATGTGTCACTGGTCTCTCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACACAAAGATTAGGTGGTCAGTATAGCCCCAATTTGCATCCACAATGTACCCATTTGGTGGTTCAGAGCTTTGGTGGACGGAAATTTGACCATGCGCTAAAGCATGGAGCAAAGAATGGTCTCTTCATCGTCACATTGGGTTGGTTTGTGGATAGTGTCAGGAAAAATGTGAGGTTGAGTGAATCACATTACAGTGTGAAGAGTTATGGGGATAACAGTATGCGCTTAGATGAAAAATCTTGTCTTCCTGCAAAAATCCATGAAACCAAGCATGCTAATAATGTTGAAGAATTTCAAAGATTTTCCGGGAGAGAGTCTAACAGAAATTCCGATTTAACTTTATCCGGTTGTTCAATCTATGTTGATCCAGGCATTTCATGTGAATTGCGAAGCAAGGTTGTTGAGAGTGCCTCAAGAGAAGGTGCTAGTTTGGTTGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTTGTGACTGAAGGGACATCCATACAAAAATATCTCGGATACTCTAGTAACCTCATTACACCACTGTGGATTCTCAAAACAGCTAAGGAGAAATATGTGCAAAGGCTTGTTCACCTGTCTGCTGATTTGGCAAGGCAAGTCGGCTTGATGCTTGTGGACAACAATGGCATTTCAGGGAAGGAAGTAATAAAGCAAAAAGTCCATGGCGATCTTCTTGGTGATGAAAATGAAGTTAGTTACAAAGAAAGACAACAGATTGTGAATTCTGCCAAAATTGGTGTCAGAAATCGGCGTGGACGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTGGACTGCATTTGCTGGTCGATATCTGAACCAACTTCAAGCGCTTCCATTTACACAGACTCTTCCAGTGTTGAAGATCGTACTCATAATCCTACTTCAACATTTTTTGATGCAAAAGAAGATGGCAAGGACTCAGAAGCTTCATTTTCAAACTCCACTCGTCCACTGACAGAAAGTGAGAAATCTGAGTTAATATTCAAAAACCATTTTCTGACCATACTCTTTCCAATCGACCGATTCGCTGAGATGGGTCCTTCTTCAAGAACATTTTTCAGCAATGATGGTTTTACATGCCTTCAGGTGTTGGATTATATACATACATTTTATCAGGAAAACATTTCAAAGCAAGAAACAGAAGCTGCAATTCACACTGATTCAAGACATGCAGATAGGCTTAGATCAATGTACTCTAGTAAGGAAACAGCAGAAAGTGGCTATGTGATTTTCAAAAGGATTGAATTCTTGGGCAGTCGTATAAGTTTTGAAATGTTGAAACGTGTAACAGGAGACAACAACTCCAATGTCTATGAACTTATACTTAGGGCTTAA 1587 0.4083 MGGNGRVEVVSVKGCSRLFSSSFRGLQSMEPMSPASSSMASEQVHVRSRAPFAGLVICVTGLSKEARNQVMEATQRLGGQYSPNLHPQCTHLVVQSFGGRKFDHALKHGAKNGLFIVTLGWFVDSVRKNVRLSESHYSVKSYGDNSMRLDEKSCLPAKIHETKHANNVEEFQRFSGRESNRNSDLTLSGCSIYVDPGISCELRSKVVESASREGASLVEQWFVGCNVSHVVTEGTSIQKYLGYSSNLITPLWILKTAKEKYVQRLVHLSADLARQVGLMLVDNNGISGKEVIKQKVHGDLLGDENEVSYKERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDCICWSISEPTSSASIYTDSSSVEDRTHNPTSTFFDAKEDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFAEMGPSSRTFFSNDGFTCLQVLDYIHTFYQENISKQETEAAIHTDSRHADRLRSMYSSKETAESGYVIFKRIEFLGSRISFEMLKRVTGDNNSNVYELILRA* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1080 528 MobiDBLite consensus disorder prediction 378 393 - -
Lan15g1080 528 Pfam twin BRCT domain 55 109 IPR001357 -
Lan15g1080 528 CDD BRCT_TopBP1_rpt2_like 51 129 - -
Lan15g1080 528 Gene3D BRCT domain 50 141 IPR036420 -
Lan15g1080 528 MobiDBLite consensus disorder prediction 363 401 - -
Lan15g1080 528 SUPERFAMILY BRCT domain 49 140 IPR036420 -
Lan15g1080 528 ProSiteProfiles BRCT domain profile. 47 139 IPR001357 -
Lan15g1080 528 MobiDBLite consensus disorder prediction 363 377 - -
Lan15g1080 528 SMART BRCT_7 184 260 IPR001357 -
Lan15g1080 528 SMART BRCT_7 49 129 IPR001357 -
Lan15g1080 528 Pfam Family of unknown function (DUF6699) 351 512 IPR046522 -
Lan15g1080 528 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 528 - -
Lan15g1080 528 ProSiteProfiles BRCT domain profile. 182 260 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1080 Lan-Chr15 19795769 19801042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1080 51 139 Core DNA Replication Machinery Family AT1G77320 39.326 5.93e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1080 - - gmx:100815253 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1080 15 19795769 19801042 Lan3g1126 3 23594896 23600050 LSH