Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1079 ATGGCTGATGTTCTCGTTATGAAAGATATTGAAGCCACCGCTTCTCGTCTCGGAATCGATATCGATTCCATCGATCTCGATTCAATTCGTCTCCCCACTGCTGATAATGTTGGCATTCCAAGTGATGATGAGGATGTTCTCCAAGAGGAGAATCTGGAATTTGAGTCTGGATTCGGGAACATTATAGTTGTGGATAATTTACCAGTTGTTCCTAAGGAGAAGTTTGAGAAACTTGAAGGCGTTATTCGGAAGATCTATAGTCAGATTGGTGTTATCAAGGACGATGGTCTTTGGATGCCTGTTGATCCTGATACTGAGAAAACTTTGGGTTACTGCTTCATTGAATATAATTCCCCTCAGGAAGCCGAGCTTGCTAAAGAGAGGACTCACGGATACAAACTGGATCGTGCACACGTATTTTCGGTGAACATGTTTGATGACTTTGATAGGTTCATGAAAGTTCCGGATCAGTGGGCTCCTCCTGAAACCAAGCCATATGCTCCAGGGGAGAATCTTCAAAATTGGCTCACTGATGCAAAAGCCCGAGATCAGTTTGTGATTCGTGCTGGTTCAGATACCGAGGTTCTATGGAATGATGCAAGGCATTTGAAACCTGATCCTGTTTATAAACGCACGTTTTGGACTGAGAGCTTTGTGCAATGGTCGCCTCTGGGAACATACTTGGCAACAGTTCACAGGCAGGGGGCAGCTGTTTGGGGAGGTGCTTCAACCTTCAACCGTCTCATGCGTTATGCTCATCCGCAGGTAAAACTTATTGATTTTTCACCCGGTGAGAAGTATTTGGTAACATATAGCAGCCACGAACCCAGCAACCCCAGAGATGCTAATAGAGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTTATGAGGGATTTTAAAGGAAGTGCTGATGACTTTGCAATTGGAGGTGCTGGTGGTGTCACTGGGGTGTCTTGGCCTATTTTCAAATGGAGTAATGGAGGAGATGATAAGTATTTTGCAAGGATGGGGAAAAATGTACTCTCTGTATATGAGACAGACACTTTTTCTCTCGTTGACAAGAAGTCCTTAAAGGTTGAAAATATAGTGGATTTCAGCTGGTCTCCAACTGATCCAATTATTGCACTCTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCTAGGGTAAGTCTGATTCAAATCCCCAGCAAAGTGGAACTCAGGCAGAAAAATCTGTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGATTACCTTGCTGTTAATGTAGATCGGTTTACAAAAACTAAGAAAAGCACATACACAGGCTTTGAGCTTTTCTACATAAAAGAACGTGACATACCCATAGAAGTTCTAGAGCTTGAGAACAAGAATGACAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCAATAGGTTTGCAGTTATCCATGGAGACAATCCTAAGCCTGATGTTAGCTTTTACACAATGAGGACTGCTCAGCACACCGGCCGAGTTTCAAAGCTCACTACTTTGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCACCAGTAGGTCGCTTCATTGTACTAGCAGGGTTGAAAGGCTTTAATGGGCAGTTAGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACTGATATTGACTGGGATCCAACTGGAAGGTATGTTGCAACAGCCGTTACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAACATCTCTATCGGATACTGAAGGATCACTTCTTCCAGTTCTTATGGCGTCCAAGGCCACCGTCTTTCTTGAGTGCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGCAAGAAATATGAGGCCGAAGATCAAGATGTTTCATTGCTGCTGAGCGAGCAGGAGCGTGAAAAGCGTAGGGCTTTGAAAGAAGATTGGGACAAGTGGATCAATGAATGGAAGAGGTTGCATGAAGAAGAGAAGTTATACAGGCAAAATCTGAGGGATGGAGAGGCAAGTGATGAAGAAGAGGAATATGAGGCCAAGGACATTGAAGTTGAGGAAGTGATTAATGTATCAGAAGAGATCCTTCACTTTGAATAA 2148 0.4288 MADVLVMKDIEATASRLGIDIDSIDLDSIRLPTADNVGIPSDDEDVLQEENLEFESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKDDGLWMPVDPDTEKTLGYCFIEYNSPQEAELAKERTHGYKLDRAHVFSVNMFDDFDRFMKVPDQWAPPETKPYAPGENLQNWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGGVTGVSWPIFKWSNGGDDKYFARMGKNVLSVYETDTFSLVDKKSLKVENIVDFSWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKVELRQKNLFSVSDCKMYWQSNGDYLAVNVDRFTKTKKSTYTGFELFYIKERDIPIEVLELENKNDKIIAFAWEPKGNRFAVIHGDNPKPDVSFYTMRTAQHTGRVSKLTTLKGKQANALFWSPVGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIDWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRALKEDWDKWINEWKRLHEEEKLYRQNLRDGEASDEEEEYEAKDIEVEEVINVSEEILHFE* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1079 715 CDD RRM_eIF3B 59 143 IPR034363 -
Lan15g1079 715 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan15g1079 715 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Lan15g1079 715 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 7 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan15g1079 715 SUPERFAMILY DPP6 N-terminal domain-like 217 604 - -
Lan15g1079 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 135 IPR000504 GO:0003723
Lan15g1079 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Lan15g1079 715 Gene3D - 179 382 IPR015943 GO:0005515
Lan15g1079 715 PIRSF Transl_init_eIF3b 6 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan15g1079 715 Coils Coil 618 638 - -
Lan15g1079 715 Gene3D - 59 143 IPR012677 -
Lan15g1079 715 SMART rrm1_1 61 143 IPR000504 GO:0003723
Lan15g1079 715 Gene3D - 407 630 IPR015943 GO:0005515
Lan15g1079 715 SUPERFAMILY RNA-binding domain, RBD 57 144 IPR035979 GO:0003676
Lan15g1079 715 PANTHER BNACNNG51870D PROTEIN 7 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1079 Lan-Chr15 19786423 19790933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1079 9 713 Eukaryotic Initiation Factors Gene Family AT5G27640 76.629 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1079 K03253 - gmx:100779711 1332.01