Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1057 ATGGCAAAGTGTCACCGTAACGACGTCGGATCTCTCATTCTCGATCACCGCCACCCTACCAAAAACTCTACCTCCGGCGGACACTTCCGCCTCTGGAATTCCTCCCTCCGCCGCATCATCTTCGACGCCGTCAGCTGCGGTGGCACCTCTCGCTACAAATATGACGACGGTGACACCTCCTCCATTTCCACAACGGGACGCAAGGAGAAACATGCGGAAAATCATAAATCGGAGAAGAAGCTATCGGATCTTCTGAACGTAGAGGAGAATGAAACGGAAGCATCGAAGAGGAAGGAAGAGGAATTGAGGGAAGTGGTGAAGGAGTTGGAAGGAGAAGATTGGGTGAGAAAGAGAATGGCAGCGAAGAGAGTGAGGATTATGGCGAAGGAAGAAGGGTTGGAAGTGAGAAGAACGCTTGCAATGCTTGGAGTGATTCCACTACTTGTTGGAATGCTTGATCATGATAACGAATGCGTTGAGTCTCAGATCGCTTCTCTCTATGCGTTACTCAATCTTGGAATCGGAAATGATGCAAATAAAGCAGCCATTGTCAAAGTTGGCGCGGTTCACAAGATGCTTGCCCTCATTGATTCCCCAGATTCATCAGTGTGTGAAGCAATTGTTGCAAATTTCCTTGGATTGAGTGCCTTGGATTCTAACAAACCAATAATTGGATCCTCGGGTGCAATACCAGTCCTAGTTAGAACCCTTCAAGATTTAGATAATAAACATAGCACACAAGCTAAGCAAGATGCTCTCCGAGCTCTGTACAATCTTTCAATAACTCCAACCAACATTTCATTCATTTTGGAAACGGATTTGGTCTCATTTCTGGTAAACTCAACAGGAGACATGGAAGTAAGTGAGAGAACCCTCTCAATCCTAAGCAATTTGGTATCAACTCCTGAGGGTAGAAAAGCTATCAGTGCTGTAAGGGATGCAATCCCAATTATGATGGATGTATTGAGTTGGACAGATTCACCACAATGCCAAGAGAAAGCATCATACATTTTAATGATTATGGCACACAAATCCTATGGTGACAGGCACACCATGATTGAAGCAGGGATTGCATCATCATTGCTTGAGTTGACGCTTTTCGGCACCCAGTTGGCACAGAAAAGAGCCTCAAGGATATTGGAATGTTTGAGGCTGGATAAAGGGAAGCAGGTTTCGCGGCGCTACCGTGGAAACCTCGGTGCAACTGTATCTGCACCTATATGTGGCTCTTCATCATCTTTTACGAAGACAGAGGGTAGAAGCGTGGAGGACGAAGATATGATGAGCGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAAAGTTTGCAGAACAACATGAGGAAAATTGTGAAGAGGGCCAACTTGCGTCATGATTTCGTTCCATCAGATCGTTTTACTTCCTTCACTTCAAGTTTGACTTCAAAGAGCCTGGCACTTTGA 1443 0.4553 MAKCHRNDVGSLILDHRHPTKNSTSGGHFRLWNSSLRRIIFDAVSCGGTSRYKYDDGDTSSISTTGRKEKHAENHKSEKKLSDLLNVEENETEASKRKEEELREVVKELEGEDWVRKRMAAKRVRIMAKEEGLEVRRTLAMLGVIPLLVGMLDHDNECVESQIASLYALLNLGIGNDANKAAIVKVGAVHKMLALIDSPDSSVCEAIVANFLGLSALDSNKPIIGSSGAIPVLVRTLQDLDNKHSTQAKQDALRALYNLSITPTNISFILETDLVSFLVNSTGDMEVSERTLSILSNLVSTPEGRKAISAVRDAIPIMMDVLSWTDSPQCQEKASYILMIMAHKSYGDRHTMIEAGIASSLLELTLFGTQLAQKRASRILECLRLDKGKQVSRRYRGNLGATVSAPICGSSSSFTKTEGRSVEDEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLRHDFVPSDRFTSFTSSLTSKSLAL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1057 480 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 143 187 IPR000225 GO:0005515
Lan15g1057 480 Coils Coil 84 112 - -
Lan15g1057 480 MobiDBLite consensus disorder prediction 62 78 - -
Lan15g1057 480 MobiDBLite consensus disorder prediction 55 78 - -
Lan15g1057 480 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 479 - -
Lan15g1057 480 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 479 - -
Lan15g1057 480 MobiDBLite consensus disorder prediction 411 430 - -
Lan15g1057 480 Gene3D - 72 456 IPR011989 -
Lan15g1057 480 SMART arm_5 176 216 IPR000225 GO:0005515
Lan15g1057 480 SMART arm_5 262 300 IPR000225 GO:0005515
Lan15g1057 480 SMART arm_5 304 343 IPR000225 GO:0005515
Lan15g1057 480 SMART arm_5 132 174 IPR000225 GO:0005515
Lan15g1057 480 SMART arm_5 217 261 IPR000225 GO:0005515
Lan15g1057 480 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 228 260 IPR000225 GO:0005515
Lan15g1057 480 SUPERFAMILY ARM repeat 101 386 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1057 Lan-Chr15 19610355 19612784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1057 77 384 U-box Gene Family AT2G23140 30.000 2.13e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1057 - - gmx:100796229 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1057 15 19610355 19612784 Lan3g1106 3 23421493 23423610 LSH
Lan10g0936 10 14005717 14008746 Lan15g1057 15 19610355 19612784 PCT
Lan3g1722 3 29749586 29752526 Lan15g1057 15 19610355 19612784 PCT
Lan15g1057 15 19610355 19612784 Lan10g0936 10 14005717 14008746 PCT
Lan15g1057 15 19610355 19612784 Lan3g1722 3 29749586 29752526 PCT