Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1056 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCTGATCGCAAGCCAATTTATAATATAGATGACTCAGATGATGATGATCTTTTGCCTAGAAAACCTGGGACAACTCAGGAGAAGTTTGAGAGGATAGTTCGAAGTGATGCAAAAGAGAATTTGTGTCAAGCTTGTGGAGAAAGTGGAAATCTTCTTAGCTGTGAAACGTGCAATTATGTTTACCATCCTAGGTGTTTACTTCCACCACTTAAAGGTCCCGTTCCGGACAGTTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATCGATAAGATATTAGACTGTGAGATGCGCCCTACTGTAGCTGCTGATAATGATGCCACAGTATCGGGGTCAAAGCAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGACTATCATATTTGCATTGCAGTTGGGTGTTGGAGAAAGATTTTCAGAAAGCTTTCAAGACTCATCCTCGCTTAAAGACCAAACTGAACAACTTCAATCGTCAAATGGCGTTGGTCAATAGTTCTGAGGAAGATTTTCTTGCCATTCGACCTGAATGGACTACAGTTGATCGAGTACTTGCTTGCAGGGGTGACGATGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCGTATGATGAATGCTATTGGGAGTATGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAACGATTTAATACATTACGCTCTAAATCCAGCAAACTTACTCCCTCTAATCAAAAAAGCAGTGACAAGTTTGATGCTGAGTTGAAGAAACATCAGAAAGAATTTCAACAGTATGAACATAACCCTGATTTTCTTTCAGGCGGTATGCTGCATCCATATCAGCTTGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTGGGGAAAACCATACAAAGTATTGCTTTCTTAGCAGCCCTTTCTGAAGAGGGCATTTCTCCACATCTGGTGGTTGCTCCACTTTCGACATTGAGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTGCTGTTATACGAGAGCATGAATTTTACTTTCCAAAAAAACAGAATATCAAGAGAAAGAAATCTAGTCAATTTTTTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACTTGGACACAACATCATTGAAACCTATAAATTGGGATTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGACTCAAAATTATTTTCTTCATTGAAGCAGTACTCTACCAGACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAACAACCTGGATGAACTTTTTATGCTTATGCATTTCCTTGATGCCGGGAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAAATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTGCTGCGAAGAGTGAAGAAAGATGTCATGAAAGAACTACCACCTAAAAAGGAACTTATTTTACGTGTTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGCAATTATGAGATATTAACTCGCCGCGGTGGTGCTCAGATTTCTCTTATTAATGTTGTCATGGAACTGCGTAAGCTCTGTTGCCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGATGATGCGAAAGAATCATTCAAACAGCTGCTAGAAGCATCTGGGAAGTTGCAATTGCTGGACAAGTTGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCTCAATTTCAGCACATGCTGGACTTACTTGAAGATTACTGTTCTTACAAGAATTGGCAGTACGAAAGAATAGACGGCAAAGTTGCTGGGGCCGAAAGACAAATACGGATAGATCGTTTTAATGCCAAGAACTCATCAAGATTCTGCTTTCTTTTGTCTACCAGAGCTGGGGGTTTGGGGATAAACCTCGCAACTGCTGACACGGTCATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGGGGAACCATAGAAGAAAGGATGATGGAGTTGACAAAAAAGAAAATGGTGTTAGAGCACCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATCAATCAGGAAGAGTTAGATGACATCATAAGGTATGGCTCAAAGGAGTTATTTGTGGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATCCATTATGATGCTGCTGCTATCGATAGATTGTTGAATCGTGACCAAGTTGGAAATGAAGAGGCTACTTTGGAAGATGAAGATGAAGATGGATTTCTGAAGGCTTTCAAGGTTGCAAATTTTGAGTATGTTGATGAAGCCCAGGCTGCAGCAGAGGAGTCAGCACAAGAAAGAGTAATGGAGTCTCTGGACAGTTCAGAAAGAACAAATTACTGGGAGGAGTTGTTAAAAGACAAGTATCAAGAGCATAAGGTTGAGGAGTTTAGTTCCTTGGGCAAAGGGAAGCGAAGTCGCAAGATGATGGTTTCTGTTGAGGAGGATGACCTTGCTGGTCTGGAAGATGTTAGCACTGATGGTGAAGATGACAATTACGAAGCAGAGCTTACTGATGGTGATTCAAATTCAACTGGAACTACTTCTGCTAGAAGGCCTTATAGAAAGAAAGCTCGTGCAGATAGCTCAGAGCCGCTCCCTCTAATGGAAGGTGAAGGAAGATCATTCAGGGTACTTGGCTTTAGTCAAAATCAGAGAGCTGCATTTGTGCAAATATTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACCTCCCGCATGAAAAAGAAGACTTATGAAGAAATCAAAGATTATGGGACCCTTTTCTTGTCTCATATCGCTGAAGATATAACTGATTCCTCCACATTTGCAGACGGTGTTCCCAAAGAAGGTCTCCATATACAAGATGTTCTTGTTAGGATTGCAATTCTGCTCTTGATAAAGGACAAAGTCAAGTTTGCATCAGAAAATCCTCGAATTGCACTGTTTTCAGATGACATATTATTTCGCTATCCTGGTTTGAAGGGTGCAAAAATATGGAAGGATGAGCATGACAGAGTTTTACTGGGTGCTGTGTTGAAGCACGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGACCTGACTATTCAGGAGGTCATCTGTAAAGAGTTGAATCTTCCCCTTGTAACTTTACCAGTGCCAGGACACGTTGGCTCTCGTGCGCAAAATGGTCCAAATTTAGCAAATGTGGAAGGGCCTCCCAGCCAATCTAGGGAAAATTGTGAGACTGACATAGCAGCTGATGGTGCACAAGGTTCTGCTGATGCTAAGAACCAAGCACAGTTATATCAAGATTCCTTGGTATTATATCATTTTAGAGACATGCAGAGAAGACTGGTTGAGTTTATAAAGAAGAGGGTTCTTCTCTTGGAAAAGGGGCTCAATGCTGAGTACCAGAAAGAGTACTTCGGTGATCTAAAAGCAAATGAAGAACATAAAAGTGAGCCCAAAGCTACAAGTTTTCCAAATTATAAATTAGGGGGACCTGACACCCAAATGAATGATCAACTGCCTCTGGTGGAAGCAATAGTTTTGGAAGAGATTTCGGGTGCTGCTTGTGATAAGGATCCAAATCAAATGGAACTAGTTCGACTTTACAATCAGATGTGCAAGGTAGTGAAGGAAAACCCCTTGGATTTAGTTCGAACATCTTTGGAAAGGGAACAAGCAGAGGGAAATTTGGTGAAGAACATCCCTTCACTAGGAACCATTTGTGAAGATATTAACTGTCTCCTTACACTCGCACAAGATCAGACTACTGCGGAAATGACAGTATCCAATTCAGACAATAAAGCAGAGGCTGCTATAGCAAAAGGGGACCGGAAACTTGATAACTCAGCAGACAATGAGAGCAAATATCTCATAATAGAGCCCAAACCTGAAAATGAAAGCTACTCAAGCCTAGTACAAAAGATGGGAGGTGATGCAGAAATGGGTGAAACTAAGAATGATGCTGAACTGAATGAAAACACAGATAAATCTGGTGCTGGGGAATCGGATGATTAA 4248 0.4098 MSSLVERLRVRSDRKPIYNIDDSDDDDLLPRKPGTTQEKFERIVRSDAKENLCQACGESGNLLSCETCNYVYHPRCLLPPLKGPVPDSWRCPECVSPLNDIDKILDCEMRPTVAADNDATVSGSKQIFVKQYLVKWKGLSYLHCSWVLEKDFQKAFKTHPRLKTKLNNFNRQMALVNSSEEDFLAIRPEWTTVDRVLACRGDDDEKEYLVKWKELPYDECYWEYESDISAFQPEIERFNTLRSKSSKLTPSNQKSSDKFDAELKKHQKEFQQYEHNPDFLSGGMLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAALSEEGISPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARAVIREHEFYFPKKQNIKRKKSSQFFSESKQDRIKFDVLLTSYEMINLDTTSLKPINWDCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYEILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKESFKQLLEASGKLQLLDKLMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVAGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMELTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFVDENDEAGKSRQIHYDAAAIDRLLNRDQVGNEEATLEDEDEDGFLKAFKVANFEYVDEAQAAAEESAQERVMESLDSSERTNYWEELLKDKYQEHKVEEFSSLGKGKRSRKMMVSVEEDDLAGLEDVSTDGEDDNYEAELTDGDSNSTGTTSARRPYRKKARADSSEPLPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTSRMKKKTYEEIKDYGTLFLSHIAEDITDSSTFADGVPKEGLHIQDVLVRIAILLLIKDKVKFASENPRIALFSDDILFRYPGLKGAKIWKDEHDRVLLGAVLKHGYGRWQAIVDDKDLTIQEVICKELNLPLVTLPVPGHVGSRAQNGPNLANVEGPPSQSRENCETDIAADGAQGSADAKNQAQLYQDSLVLYHFRDMQRRLVEFIKKRVLLLEKGLNAEYQKEYFGDLKANEEHKSEPKATSFPNYKLGGPDTQMNDQLPLVEAIVLEEISGAACDKDPNQMELVRLYNQMCKVVKENPLDLVRTSLEREQAEGNLVKNIPSLGTICEDINCLLTLAQDQTTAEMTVSNSDNKAEAAIAKGDRKLDNSADNESKYLIIEPKPENESYSSLVQKMGGDAEMGETKNDAELNENTDKSGAGESDD* 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1056 1415 Gene3D - 527 751 IPR027417 -
Lan15g1056 1415 SUPERFAMILY Chromo domain-like 180 240 IPR016197 -
Lan15g1056 1415 CDD CD1_tandem 97 169 - -
Lan15g1056 1415 Gene3D - 97 188 - -
Lan15g1056 1415 Pfam Chromo (CHRromatin Organisation MOdifier) domain 192 239 IPR023780 -
Lan15g1056 1415 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 156 IPR023780 -
Lan15g1056 1415 Pfam CHD subfamily II, SANT-like domain 931 1064 IPR009462 GO:0003677|GO:0006338
Lan15g1056 1415 Pfam SNF2-related domain 305 584 IPR000330 GO:0005524|GO:0140658
Lan15g1056 1415 ProSiteProfiles Chromo and chromo shadow domain profile. 99 181 IPR000953 -
Lan15g1056 1415 MobiDBLite consensus disorder prediction 899 920 - -
Lan15g1056 1415 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Lan15g1056 1415 SMART PHD_3 52 95 IPR001965 -
Lan15g1056 1415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 96 IPR013083 -
Lan15g1056 1415 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 482 IPR014001 -
Lan15g1056 1415 SMART DUF1087_2 838 903 IPR009463 -
Lan15g1056 1415 ProSiteProfiles Rubredoxin-like domain profile. 60 104 IPR024934 GO:0005506
Lan15g1056 1415 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 610 771 IPR001650 -
Lan15g1056 1415 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1053 - -
Lan15g1056 1415 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Lan15g1056 1415 MobiDBLite consensus disorder prediction 1356 1415 - -
Lan15g1056 1415 MobiDBLite consensus disorder prediction 1391 1415 - -
Lan15g1056 1415 MobiDBLite consensus disorder prediction 899 951 - -
Lan15g1056 1415 SMART ultradead3 281 493 IPR014001 -
Lan15g1056 1415 SMART helicmild6 636 720 IPR001650 -
Lan15g1056 1415 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1053 - -
Lan15g1056 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 774 IPR027417 -
Lan15g1056 1415 SMART chromo_7 189 243 IPR000953 -
Lan15g1056 1415 SMART chromo_7 98 161 IPR000953 -
Lan15g1056 1415 Pfam PHD-finger 53 95 IPR019787 -
Lan15g1056 1415 Pfam CHD subfamily II, DUF1087 842 900 IPR009463 -
Lan15g1056 1415 Coils Coil 256 276 - -
Lan15g1056 1415 Gene3D - 277 526 IPR038718 -
Lan15g1056 1415 SUPERFAMILY Chromo domain-like 65 174 IPR016197 -
Lan15g1056 1415 Gene3D - 189 240 - -
Lan15g1056 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 517 IPR027417 -
Lan15g1056 1415 Gene3D - 1034 1178 - -
Lan15g1056 1415 SMART DUF1086_2 908 1067 IPR009462 GO:0003677|GO:0006338
Lan15g1056 1415 Pfam Helicase conserved C-terminal domain 607 720 IPR001650 -
Lan15g1056 1415 CDD CD2_tandem 189 238 - -
Lan15g1056 1415 MobiDBLite consensus disorder prediction 1223 1244 - -
Lan15g1056 1415 CDD SF2_C_SNF 605 731 - -
Lan15g1056 1415 ProSiteProfiles Chromo and chromo shadow domain profile. 191 238 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1056 Lan-Chr15 19585017 19606496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1056 307 747 RAD5 or RAD16-like Gene Family AT1G02670 22.841 4.22e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan15g1056 SNF2_N 1.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1056 K11643 - gmx:100790230 2349.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1056 15 19585017 19606496 Lan3g1104 3 23384526 23402641 LSH
Lan6g1786 6 29176737 29196652 Lan15g1056 15 19585017 19606496 PCT
Lan3g1721 3 29726038 29747358 Lan15g1056 15 19585017 19606496 PCT
Lan15g1056 15 19585017 19606496 Lan6g1786 6 29176737 29196652 PCT
Lan15g1056 15 19585017 19606496 Lan3g1721 3 29726038 29747358 PCT