Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1055 ATGACAGTGGAAAATACAATGGTTGATCCTAGTGACCAGTTTCCTATAGGGATGCGTGTTCTTGCAGTGGATGATGACCCAACATGCCTCTTTGTTTTGGAAACTCTCCTCAAAAGATGTCAATATCACGTAACCACAACTAATCAAGCCATAACGGCATTGTCGTTGTTGAGAGAAAATAAAGACAAGTTTGACTTGGTAATCAGTGATGTGCACATGCCGGACATGGATGGATTTAAGCTGCTTGAGCTTGTTGGGCTTGAAATGGATCTACCTGTCATAATGTTGTCTGCAAACGGTGATAAGAAGATGGTGATGAAGGGGATTTCTCACGGAGCTTGCGATTATCTTCTGAAACCTGTGAGAATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGGAAGAAGTTTGATTCAAAGGAGAATAAAACAAGCAGCCTAGAGAAGGCTACTACTGATAGTGGCAATGGACTAGGGTCAACAGGAAGAGGAAATTCATATCAAGATGGAAAGGTGAATAAAAAGAGGAAGGACCAGGATGATGAAGAAGATGAGGAGCAAGAGAATGATAATGAAGATCCGTCAACACAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGTTGCACCGACAGTTTGTTGCGGCTGTTAATCATTTAGGCATTGAAAAGGCTGTACCTAAAAAAATTCTTGATATGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCCAGCCATCTCCAGAAATACAGGCTTTATCTGAAAAGAATTAGTTGTGTGGCAAACCAACAGGCTAATATAGTGGCAGCCTTCGGGAGCGCAGATCATTCCTATTTGAGAATGGGTTCCGTGAGTGGGGTTGGACATTTGCAAACACTGAGTAGTTCTGGACAGTTTCATAATGCTTTCGGATCCTTTCCACCTGGTGGGATGATTAGCAGATTGAATACTCCTTCTGGTCTGAATGTGCATGGATTTCCTTCTCCTGGAGTACATCAGTTGGGTCAAACACAAAATTTAATCGACTCCACGAATGATCAACTTAAGTTCCAGCCAGCCATAGTTCCTGTTAACCAGAATGGTGTTCAGGGAATGCCAGTGTCCGTAGGGTTTGATCGTTTGCAACAGAATGAAGGTGTGATTTCTGTTCAAAACATGACCGCTGCTAATGATGCGAGAGCAACTTTTCCCATACATAAACTTCCAGATCGAGGACAAAGAGTAACTGCCAGTGGCTCACACACTCCGCGTTTGGGTATCTCCAACGATGCCTTGATGTTGGAATCACATCCACAAGATACAGTTGGGGGTATAGTATATCAAAAATCATCTTCTTCAGTACGCTCTCAACATTCAGAAGTTTCTTTGTCTTTGCCAGATCAAGGTAGGTATCCCGATAATTGGTCAAGTGCTATGCAGCCATCTGGGGTCCCGACAAAATCTCACCCACCAAGTGAATGTCTTAAACATACATCTCTACATTCTATAGATAACATGGCATCTTTACCCTTACAAGGGGGGAACCTGGGAGGTCCTTCATATTTCCCTTCACTGTACAGTCAAACTCATGATTCGATGAGTGATATGCACTCCCGAAGAGTGCTTTTTACTAATAGACCTGGTCATATAAGCAGTGATGTACCGTTCCAAGATTGGGATGACCATAACCAGGATGGTAATTATCATTCAAATGTTGGTCGCAGCTCAATGAAACCTTTAAGTGCTCCGGTTAATGGTGCCATTTGTCCCGCAGGCCGTAACAGAAAAATGGACTTCAATTTTTGTGACCCTTTACAAATGAAGTGTCATGAGGTCGTGGAGTTAACTGCAGAGACCTCATTGAAACATCAGGGTAATAATATGAACCAGCAGAAGTCTCAACAAAGTCGTTTTTCTAACAATCTTGGTTCACTGGAAGACTTTGTCAGTTCAATTATGAAACAGGAGCAAAGATAA 1962 0.4246 MTVENTMVDPSDQFPIGMRVLAVDDDPTCLFVLETLLKRCQYHVTTTNQAITALSLLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDKKMVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKENKTSSLEKATTDSGNGLGSTGRGNSYQDGKVNKKRKDQDDEEDEEQENDNEDPSTQKKPRVVWSVELHRQFVAAVNHLGIEKAVPKKILDMMNVEKLTRENVASHLQKYRLYLKRISCVANQQANIVAAFGSADHSYLRMGSVSGVGHLQTLSSSGQFHNAFGSFPPGGMISRLNTPSGLNVHGFPSPGVHQLGQTQNLIDSTNDQLKFQPAIVPVNQNGVQGMPVSVGFDRLQQNEGVISVQNMTAANDARATFPIHKLPDRGQRVTASGSHTPRLGISNDALMLESHPQDTVGGIVYQKSSSSVRSQHSEVSLSLPDQGRYPDNWSSAMQPSGVPTKSHPPSECLKHTSLHSIDNMASLPLQGGNLGGPSYFPSLYSQTHDSMSDMHSRRVLFTNRPGHISSDVPFQDWDDHNQDGNYHSNVGRSSMKPLSAPVNGAICPAGRNRKMDFNFCDPLQMKCHEVVELTAETSLKHQGNNMNQQKSQQSRFSNNLGSLEDFVSSIMKQEQR* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1055 653 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 257 IPR017930 -
Lan15g1055 653 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lan15g1055 653 Gene3D - 197 260 - -
Lan15g1055 653 Coils Coil 640 653 - -
Lan15g1055 653 PIRSF RR_ARR_type-B 1 653 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan15g1055 653 CDD REC_typeB_ARR-like 20 134 - -
Lan15g1055 653 MobiDBLite consensus disorder prediction 150 170 - -
Lan15g1055 653 SMART REC_2 18 130 IPR001789 GO:0000160
Lan15g1055 653 Pfam Myb-like DNA-binding domain 203 253 IPR001005 -
Lan15g1055 653 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 648 - -
Lan15g1055 653 SUPERFAMILY CheY-like 17 140 IPR011006 -
Lan15g1055 653 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 648 IPR045279 GO:0009736
Lan15g1055 653 MobiDBLite consensus disorder prediction 141 203 - -
Lan15g1055 653 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lan15g1055 653 SUPERFAMILY Homeodomain-like 198 258 IPR009057 -
Lan15g1055 653 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
Lan15g1055 653 MobiDBLite consensus disorder prediction 445 487 - -
Lan15g1055 653 Gene3D - 17 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1055 Lan-Chr15 19579159 19583482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1055 1 652 Response Regulator Gene Family AT2G25180 43.433 1.98e-138 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan15g1055 Response_reg 9.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1055 - K14491 gmx:100809002 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1055 15 19579159 19583482 Lan3g1103 3 23379367 23383728 LSH
Lan10g0938 10 14029664 14032744 Lan15g1055 15 19579159 19583482 PCT
Lan3g1103 3 23379367 23383728 Lan15g1055 15 19579159 19583482 PCT
Lan15g1055 15 19579159 19583482 Lan10g0938 10 14029664 14032744 PCT
Lan15g1055 15 19579159 19583482 Lan3g1103 3 23379367 23383728 PCT