Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1051 ATGGCCAGACCACAACAGCGTTATCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTATCCGAAATTCGACATCCTATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAAGATGCAGCTAGAGCATATGATGAAGCAGCAAGGCTAATGTGCGGTACAAGGGCAAGAACAAACTTCCCTTACAATCCGAACGCGCCGCAATCATCATCTTCTAAGGTTCTATCAGCAACTTTAACTGCTAAACTTCACAGGTGCTATATGGCTTCTCTTCAAATGACCATGGCATCACCATTGCCAGAGCCTCGAAGCGTTACGGCTTCACCAAATAATGTCATTTCCACAAGCAACTTATTACCTATGAAAGGGAGTGAAACTGATGCAATGTCGTTGCCATCGAAGAGAGAACAAGAGGAACAAGAAACAGAAGGGAATTGGGTTTACAAGAAGGTTAAAGTTGAAAGTTCTCAGCAGTTCAAGCCTCTTGAAGAAGATCATATAGAGCAAATGATACAAGAGTTGCTTCATTATGGCTCTATTGAACTGTGCTCTGTTTTTCCATCTCAGGCTGTTTGA 585 0.4325 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNAPQSSSSKVLSATLTAKLHRCYMASLQMTMASPLPEPRSVTASPNNVISTSNLLPMKGSETDAMSLPSKREQEEQETEGNWVYKKVKVESSQQFKPLEEDHIEQMIQELLHYGSIELCSVFPSQAV* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1051 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 188 - -
Lan15g1051 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Lan15g1051 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 188 - -
Lan15g1051 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lan15g1051 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lan15g1051 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lan15g1051 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lan15g1051 194 MobiDBLite consensus disorder prediction 117 145 - -
Lan15g1051 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lan15g1051 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lan15g1051 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1051 Lan-Chr15 19541775 19543102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1051 1 194 AP2-EREBP Transcription Factor Family AT5G25190 63.131 2.79e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan15g1051 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1051 - - gmx:100819158 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1051 15 19541775 19543102 Lan14g0822 14 15030074 15031400 LSH
Lan15g1051 15 19541775 19543102 Lan3g1100 3 23350587 23351610 LSH
Lan3g1100 3 23350587 23351610 Lan15g1051 15 19541775 19543102 PCT
Lan15g1051 15 19541775 19543102 Lan3g1100 3 23350587 23351610 PCT